Non-Coding RNA Search

Mixn-0015h06

Sequence:


               
               TTTATTTGGGGAGCGCGCGGACGGCGGAGGCTGGCGGCGGCAGTGGCTGCCGCAGACGTT
GGTTAAAAAAAGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCGGCAGCGGCGGCGAGTAAT
GGGAGCGCCGTGGCTCCCGGGCGCAGGCGGGAGCTGCCGAGCTTTCTGGGCAAGGCGGGA
GTGCTGAGGAGAAAGGGGAGCGTCGAGGGCCCCGCAGCCCGCTCCCGAGGCGCGGGCCGG
GTTTTTGTTCGGCTGCGCGGAGCGCCAGGCAGCCCGAACCAACAACTCCAGTTACAACAA
CAACCCACCTTCCAGCTGCCGAGCGAGAATAGGGCTGCTGCGTCCGTCCTATTGTTTAGA
CACTTGCCAGGAGCTCGGGAGTCCGCAGAGCCACATAGTCCCCGCTCCTGTCGCCGCCTT
CCCTCTCCCCCTCATCACTCCCCAGAGAAGGAGGCGCGGAAAGCCGCCGGGAGAGGGGAA
GGGGCTGGAAGGAGACCGGCTGCTCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTTGGGGAGCGCGCGGACGGCGGAGGCTGGCGGCGGCAGTGGCTGCCGCAGACGTT
GGTTAAAAAAAGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCGGCAGCGGCGGCGAGTAAT
GGGAGCGCCGTGGCTCCCGGGCGCAGGCGGGAGCTGCCGAGCTTTCTGGGCAAGGCGGGA
GTGCTGAGGAGAAAGGGGAGCGTCGAGGGCCCCGCAGCCCGCTCCCGAGGCGCGGGCCGG
GTTTTTGTTCGGCTGCGCGGAGCGCCAGGCAGCCCGAACCAACAACTCCAGTTACAACAA
CAACCCACCTTCCAGCTGCCGAGCGAGAATAGGGCTGCTGCGTCCGTCCTATTGTTTAGA
CACTTGCCAGGAGCTCGGGAGTCCGCAGAGCCACATAGTCCCCGCTCCTGTCGCCGCCTT
CCCTCTCCCCCTCATCACTCCCCAGAGAAGGAGGCGCGGAAAGCCGCCGGGAGAGGGGAA
GGGGCTGGAAGGAGACCGGCTGCTCTGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-152, - strand, RNAz p=0.999865
               

               
               387-509, - strand, RNAz p=0.92166

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-152, - strand, RNAz p=0.999865
               

               
               387-509, - strand, RNAz p=0.92166

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               397-520, - strand, RNAmicro p=0.999886

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               397-520, - strand, RNAmicro p=0.999886

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-509, gnl|bosTau2|chr6 (19858138-19858632)
               

               
               1-509, gnl|Hg17|chr4 (19929808-19930323)
               

               
               1-509, gnl|Mm7|chr5 (47309046-47309538)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-509, gnl|bosTau2|chr6 (19858138-19858632)
               

               
               1-509, gnl|Hg17|chr4 (19929808-19930323)
               

               
               1-509, gnl|Mm7|chr5 (47309046-47309538)

	1-152, - strand, RNAz p=0.999865
	387-509, - strand, RNAz p=0.92166

	1-509, gnl\|bosTau2\|chr6 (19858138-19858632)
	1-509, gnl\|Hg17\|chr4 (19929808-19930323)
	1-509, gnl\|Mm7\|chr5 (47309046-47309538)