Non-Coding RNA Search

Mixn-0016m01

Sequence:


               
               TTTTCCAGCACCGGGGTGTTTTTATGTGCATGGCTCTAAGAGCAGTGCCCCAGTAATGGG
ATGGTTTTCAGTAAGAAAACTATTAAAGTGGTTTGTGTCCGAACAGTAAAAGAGAATGAC
CTATTTTCACTCCCTTTACAGTTCTGAAATCTACAGCTTGGCTATTCGTTTATCTTATGA
TGGACACCTGGAGACTCAAAAAATTTCTGTCATGGCAAAGCCCTGAAACACAGGCCAGAG
ATACCAGTCTCCAAATGGGCAGGCTCTCCCAGGGCGACCCGGGTCACCCCACAGCTGCCT
GGGCACTGGAAACTGTTTAAAACACACATGTGGGGCATTTCCCGTGTATTTGTTCTCTTC
TGCTTCAGTGTCCTCCACGGTGTAAGGTTACAAAGTCCCACCCATCCCAGGTGTGTGATT
CTCAGAATCACTGAAGGCATAATTGAAACACTTTATAATCCCAAGCAGCAGCAGGTGAAG
ATGTTGGTATAAAATCTTATGAAGCACTAGAGGCAAACACAGGTACAGCCTGAACAGAGC
TTTCCTTTCCGGCAGGGCAGGTGAAGGCAGGGAGGAGGTTGGTGCCTCTCCTACCATTAA
AAACAAACAAACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCAGCACCGGGGTGTTTTTATGTGCATGGCTCTAAGAGCAGTGCCCCAGTAATGGG
ATGGTTTTCAGTAAGAAAACTATTAAAGTGGTTTGTGTCCGAACAGTAAAAGAGAATGAC
CTATTTTCACTCCCTTTACAGTTCTGAAATCTACAGCTTGGCTATTCGTTTATCTTATGA
TGGACACCTGGAGACTCAAAAAATTTCTGTCATGGCAAAGCCCTGAAACACAGGCCAGAG
ATACCAGTCTCCAAATGGGCAGGCTCTCCCAGGGCGACCCGGGTCACCCCACAGCTGCCT
GGGCACTGGAAACTGTTTAAAACACACATGTGGGGCATTTCCCGTGTATTTGTTCTCTTC
TGCTTCAGTGTCCTCCACGGTGTAAGGTTACAAAGTCCCACCCATCCCAGGTGTGTGATT
CTCAGAATCACTGAAGGCATAATTGAAACACTTTATAATCCCAAGCAGCAGCAGGTGAAG
ATGTTGGTATAAAATCTTATGAAGCACTAGAGGCAAACACAGGTACAGCCTGAACAGAGC
TTTCCTTTCCGGCAGGGCAGGTGAAGGCAGGGAGGAGGTTGGTGCCTCTCCTACCATTAA
AAACAAACAAACAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-117, - strand, RNAz p=0.837173
               

               
               198-316, + strand, RNAz p=0.656105

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.837173
               

               
               198-316, + strand, RNAz p=0.656105

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-607, gnl|bosTau2|chr3 (29626732-29627341)
               

               
               1-607, gnl|Hg17|chr1 (107830311-107829695)
               

               
               1-607, gnl|Mm7|chr3 (109499818-109500425)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-607, gnl|bosTau2|chr3 (29626732-29627341)
               

               
               1-607, gnl|Hg17|chr1 (107830311-107829695)
               

               
               1-607, gnl|Mm7|chr3 (109499818-109500425)

	1-117, - strand, RNAz p=0.837173
	198-316, + strand, RNAz p=0.656105

	1-607, gnl\|bosTau2\|chr3 (29626732-29627341)
	1-607, gnl\|Hg17\|chr1 (107830311-107829695)
	1-607, gnl\|Mm7\|chr3 (109499818-109500425)