Non-Coding RNA Search

Mixn-0017b01

Sequence:


               
               TTTTTTTTTTGTGGAATGTATCAAATGGTCAAAGGCTAACTTCAGACTGACTAAATTCAA
AAACTATTTCCTTTGTTCTTCTGTTTGTTATTGAAAATTCATACCAGTTTGCACAAGGCA
AGAAATGAGGATCTGACCTTGTGCACACACATCAGGGTTTCATGTTGAGGAGCTCAGCCT
CGGTGGGCCCCCTGAATATCTTCGAGAAAAAAGGAGAAAGACTGCAGGACCTCCCTTGGC
CTAAAGGGCGGTAGGTGTTCCTGCCATGTCTTTGGAGTGACTCTCCGATCTGGTTGGCCT
GTGGTCACCCTCAACTGAATTATAAATATCTTCAGAAGAGTGAGTGGGAACTTTTTCAGC
AAAACTAGCAGCTTTTTTGCTTCTTCATCATTTTTTTTTCTCTTCCAAAATCAAACCAAA
GACTTATCTGTGTAATACTACCCTATTATTCCCCATTTTCAATTGCTCTGTTTCATTTTC
CCCTCTTCCCCTCCACCTGGGTCCGTCCAACTTCCCATCTCTGAAGGTAACTCTGGCCTC
TTCCTCCAATCCCACCTCTGAATCAAAGAGGGAGCAATTCAAAGGTCAGACAGTTCCCCC
AAAGCATCTATGTATAGTTTATTACTTTAAAGAACTACTTAACCTCCATCTGGTATTTAA
GAGCAAACTTTACATATTTATGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGTGGAATGTATCAAATGGTCAAAGGCTAACTTCAGACTGACTAAATTCAA
AAACTATTTCCTTTGTTCTTCTGTTTGTTATTGAAAATTCATACCAGTTTGCACAAGGCA
AGAAATGAGGATCTGACCTTGTGCACACACATCAGGGTTTCATGTTGAGGAGCTCAGCCT
CGGTGGGCCCCCTGAATATCTTCGAGAAAAAAGGAGAAAGACTGCAGGACCTCCCTTGGC
CTAAAGGGCGGTAGGTGTTCCTGCCATGTCTTTGGAGTGACTCTCCGATCTGGTTGGCCT
GTGGTCACCCTCAACTGAATTATAAATATCTTCAGAAGAGTGAGTGGGAACTTTTTCAGC
AAAACTAGCAGCTTTTTTGCTTCTTCATCATTTTTTTTTCTCTTCCAAAATCAAACCAAA
GACTTATCTGTGTAATACTACCCTATTATTCCCCATTTTCAATTGCTCTGTTTCATTTTC
CCCTCTTCCCCTCCACCTGGGTCCGTCCAACTTCCCATCTCTGAAGGTAACTCTGGCCTC
TTCCTCCAATCCCACCTCTGAATCAAAGAGGGAGCAATTCAAAGGTCAGACAGTTCCCCC
AAAGCATCTATGTATAGTTTATTACTTTAAAGAACTACTTAACCTCCATCTGGTATTTAA
GAGCAAACTTTACATATTTATGGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               468-659, - strand, RNAz p=0.999413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-659, - strand, RNAz p=0.999413

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               588-740, - strand, RNAmicro p=0.981774

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               588-740, - strand, RNAmicro p=0.981774

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-693, gnl|bosTau2|chr24 (35013192-35012498)
               

               
               3-693, gnl|Hg17|chr18 (51070198-51070904)
               

               
               3-693, gnl|Mm7|chr18 (70052483-70051777)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-693, gnl|bosTau2|chr24 (35013192-35012498)
               

               
               3-693, gnl|Hg17|chr18 (51070198-51070904)
               

               
               3-693, gnl|Mm7|chr18 (70052483-70051777)

	3-693, gnl\|bosTau2\|chr24 (35013192-35012498)
	3-693, gnl\|Hg17\|chr18 (51070198-51070904)
	3-693, gnl\|Mm7\|chr18 (70052483-70051777)