Non-Coding RNA Search

Mixn-0017b14

Sequence:


               
               GCTGGAGCTGAGGGGGCCCGGGAGTGGGCAGAGTGTATCTGTGGGATGTCCCTCTCAGCA
GCGCCCCCTTCCTGCCTGAAGCTCAGTGCTGAGGGTGCACCTGCTGTGGGAATGGAGTGG
TCCTCCCCCTCCTACCCCCACTGGAGAAACCACAACACTAGACAAAATGTCTCCTGCTAT
GGTGCTTCCCCATCCCTGATCTCATAAACATTTCCCCTAAGACTCCCTTATCAGAACAGC
TCTTCTGTCTTTGGCACAGACTGGGCTTTCAACCAGGGCCTTTGAGAGCTCTGTAGGAGG
CGGACAAGAATGCAGAGGGAGTACTCTTGGGCCTGAGCCAGGGGTGGCTGGGATAGAGAG
TATAAAGGCCCTGGGATGGTCCTTGAGAGCATGCTACCCTGTAGCGCTGAGCTCTTCAGG
TCTGCTACCAAGCCATTAGAACGTGGGTTTGGGGATGCTTCAGAAGGCCTTGGTTCCTTG
GAAATACCCCCAGAAAATTTTCCTACACACCTCAGTATCCCAGGAGAGTCTGGGATCCTG
GTGTTTGGCTCCCCCCTGGAATTCCTTCCTCTTCTTCCTTCCTGTTGGTATGCTGAGGTG
GTGGCGGCAGCAGCAGGGGGAAGAGGGGTGGGAGCTGTCCTGGCTAATACCTGCCAAAGT
TTTAGCCTACCCTGTCTGGTGGCTACNAGTTTTCAGTTGCCATGTCCTCTAGACTTGGAN
GAATGGAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAGCTGAGGGGGCCCGGGAGTGGGCAGAGTGTATCTGTGGGATGTCCCTCTCAGCA
GCGCCCCCTTCCTGCCTGAAGCTCAGTGCTGAGGGTGCACCTGCTGTGGGAATGGAGTGG
TCCTCCCCCTCCTACCCCCACTGGAGAAACCACAACACTAGACAAAATGTCTCCTGCTAT
GGTGCTTCCCCATCCCTGATCTCATAAACATTTCCCCTAAGACTCCCTTATCAGAACAGC
TCTTCTGTCTTTGGCACAGACTGGGCTTTCAACCAGGGCCTTTGAGAGCTCTGTAGGAGG
CGGACAAGAATGCAGAGGGAGTACTCTTGGGCCTGAGCCAGGGGTGGCTGGGATAGAGAG
TATAAAGGCCCTGGGATGGTCCTTGAGAGCATGCTACCCTGTAGCGCTGAGCTCTTCAGG
TCTGCTACCAAGCCATTAGAACGTGGGTTTGGGGATGCTTCAGAAGGCCTTGGTTCCTTG
GAAATACCCCCAGAAAATTTTCCTACACACCTCAGTATCCCAGGAGAGTCTGGGATCCTG
GTGTTTGGCTCCCCCCTGGAATTCCTTCCTCTTCTTCCTTCCTGTTGGTATGCTGAGGTG
GTGGCGGCAGCAGCAGGGGGAAGAGGGGTGGGAGCTGTCCTGGCTAATACCTGCCAAAGT
TTTAGCCTACCCTGTCTGGTGGCTACNAGTTTTCAGTTGCCATGTCCTCTAGACTTGGAN
GAATGGAATAT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               175-331, - strand, RNAz p=0.934641
               

               
               355-490, - strand, RNAz p=0.944345
               

               
               470-589, - strand, RNAz p=0.999742
               

               
               543-641, - strand, RNAz p=0.514319

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-331, - strand, RNAz p=0.934641
               

               
               355-490, - strand, RNAz p=0.944345
               

               
               470-589, - strand, RNAz p=0.999742
               

               
               543-641, - strand, RNAz p=0.514319

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               530-659, - strand, RNAmicro p=0.999803

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               530-659, - strand, RNAmicro p=0.999803

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173193, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173193, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-730, gnl|bosTau2|chr26 (16684858-16684118)
               

               
               1-730, gnl|canFam2|chr28 (17405802-17406615)
               

               
               1-730, gnl|dasNov1|scaffold_1670 (51751-52540)
               

               
               1-730, gnl|echTel1|scaffold_315161 (48783-49536)
               

               
               1-730, gnl|hg17|chr10 (103576182-103576992)
               

               
               1-730, gnl|Hg17|chr10 (103576946-103576178)
               

               
               1-730, gnl|loxAfr1|scaffold_58414 (1454-535)
               

               
               1-730, gnl|mm7|chr19 (45689662-45690463)
               

               
               1-730, gnl|Mm7|chr19 (45690417-45689665)
               

               
               1-730, gnl|monDom2|scaffold_14 (61641313-61640407)
               

               
               1-730, gnl|oryCun1|scaffold_194907 (28951-29779)
               

               
               1-730, gnl|panTro1|chr8 (105331844-105332654)
               

               
               1-730, gnl|rheMac2|chr9 (101462930-101463741)
               

               
               1-730, gnl|rn3|chr1 (251269658-251270447)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-730, gnl|bosTau2|chr26 (16684858-16684118)
               

               
               1-730, gnl|canFam2|chr28 (17405802-17406615)
               

               
               1-730, gnl|dasNov1|scaffold_1670 (51751-52540)
               

               
               1-730, gnl|echTel1|scaffold_315161 (48783-49536)
               

               
               1-730, gnl|hg17|chr10 (103576182-103576992)
               

               
               1-730, gnl|Hg17|chr10 (103576946-103576178)
               

               
               1-730, gnl|loxAfr1|scaffold_58414 (1454-535)
               

               
               1-730, gnl|mm7|chr19 (45689662-45690463)
               

               
               1-730, gnl|Mm7|chr19 (45690417-45689665)
               

               
               1-730, gnl|monDom2|scaffold_14 (61641313-61640407)
               

               
               1-730, gnl|oryCun1|scaffold_194907 (28951-29779)
               

               
               1-730, gnl|panTro1|chr8 (105331844-105332654)
               

               
               1-730, gnl|rheMac2|chr9 (101462930-101463741)
               

               
               1-730, gnl|rn3|chr1 (251269658-251270447)

	175-331, - strand, RNAz p=0.934641
	355-490, - strand, RNAz p=0.944345
	470-589, - strand, RNAz p=0.999742
	543-641, - strand, RNAz p=0.514319

	1-730, gnl\|bosTau2\|chr26 (16684858-16684118)
	1-730, gnl\|canFam2\|chr28 (17405802-17406615)
	1-730, gnl\|dasNov1\|scaffold_1670 (51751-52540)
	1-730, gnl\|echTel1\|scaffold_315161 (48783-49536)
	1-730, gnl\|hg17\|chr10 (103576182-103576992)
	1-730, gnl\|Hg17\|chr10 (103576946-103576178)
	1-730, gnl\|loxAfr1\|scaffold_58414 (1454-535)
	1-730, gnl\|mm7\|chr19 (45689662-45690463)
	1-730, gnl\|Mm7\|chr19 (45690417-45689665)
	1-730, gnl\|monDom2\|scaffold_14 (61641313-61640407)
	1-730, gnl\|oryCun1\|scaffold_194907 (28951-29779)
	1-730, gnl\|panTro1\|chr8 (105331844-105332654)
	1-730, gnl\|rheMac2\|chr9 (101462930-101463741)
	1-730, gnl\|rn3\|chr1 (251269658-251270447)