Non-Coding RNA Search

Mixn-0017e03

Sequence:


               
               GGCAAGAACTTGATGTGCTCATTTATTTGTGAAAATAATTTAGCACTTTTGTGCTTTGAT
GATTATTACTAAATAAGGAGTCTTTAAATCTTGTCATTAATAAGGAATTTGCATCATATT
TAGAAACCGTTTTGAGTTTCACATTCTACAGTTTCCTTGTGATAGCCCTTGTGGTTCTGC
CTGTAATCCCAGCACGCTGCCCTACCCTCCCACCCCAACCCTGTACGTGCCTTATCTTTT
ATACATTTAGTAAGGCCCTTGTTCACTCTTAAGCCCAGGGATTGATTGACTAGACCCTGT
GCTAATCAAAGACAATTTTAAGATGTGATTTCTGTTTAGATTTGAAAATGTAAACAAAGG
ACCTGATTTTTATGATTCTATGGTAAAGGAAAAAAAAATCAGATGGAAAACAGAACAACA
ACGCCTACCTTATTACGAAAGCAAGCAGAATCTTTGCAGATAAGGAATTCTGAAGACAAT
GGGCGTAATAATTCAAGGTTCTCATAGCCAGGGATCTGGCAGAAATTTTATGAAAAATAA
CAAAATAGCTTATGAGGTGAGCTGAAAGGAAATCAGTTGGCCCTCTGTAATAAGTAGAAT
GACAAAGTGAAGTCACAGATTTACTGGAAGGCCTCCTACTGACCCCAGTTGAGCTGAGTG
CAGGAATGTGTTTCCAAGCCTGCTTAAAACCCAGAGGTGGTGTTTTGAATCTGTCTTGCT
GACGTAACACAGACCCTGCCTGGAAGTTTTCCAAAGCAGAGAGCAAGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGAACTTGATGTGCTCATTTATTTGTGAAAATAATTTAGCACTTTTGTGCTTTGAT
GATTATTACTAAATAAGGAGTCTTTAAATCTTGTCATTAATAAGGAATTTGCATCATATT
TAGAAACCGTTTTGAGTTTCACATTCTACAGTTTCCTTGTGATAGCCCTTGTGGTTCTGC
CTGTAATCCCAGCACGCTGCCCTACCCTCCCACCCCAACCCTGTACGTGCCTTATCTTTT
ATACATTTAGTAAGGCCCTTGTTCACTCTTAAGCCCAGGGATTGATTGACTAGACCCTGT
GCTAATCAAAGACAATTTTAAGATGTGATTTCTGTTTAGATTTGAAAATGTAAACAAAGG
ACCTGATTTTTATGATTCTATGGTAAAGGAAAAAAAAATCAGATGGAAAACAGAACAACA
ACGCCTACCTTATTACGAAAGCAAGCAGAATCTTTGCAGATAAGGAATTCTGAAGACAAT
GGGCGTAATAATTCAAGGTTCTCATAGCCAGGGATCTGGCAGAAATTTTATGAAAAATAA
CAAAATAGCTTATGAGGTGAGCTGAAAGGAAATCAGTTGGCCCTCTGTAATAAGTAGAAT
GACAAAGTGAAGTCACAGATTTACTGGAAGGCCTCCTACTGACCCCAGTTGAGCTGAGTG
CAGGAATGTGTTTCCAAGCCTGCTTAAAACCCAGAGGTGGTGTTTTGAATCTGTCTTGCT
GACGTAACACAGACCCTGCCTGGAAGTTTTCCAAAGCAGAGAGCAAGGCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               537-628, - strand, RNAz p=0.520726
               

               
               658-772, + strand, RNAz p=0.775812

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-628, - strand, RNAz p=0.520726
               

               
               658-772, + strand, RNAz p=0.775812

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-772, gnl|bosTau2|chr11 (31252467-31251704)
               

               
               1-772, gnl|Hg17|chr18 (6765602-6766391)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-772, gnl|bosTau2|chr11 (31252467-31251704)
               

               
               1-772, gnl|Hg17|chr18 (6765602-6766391)

	537-628, - strand, RNAz p=0.520726
	658-772, + strand, RNAz p=0.775812

	1-772, gnl\|bosTau2\|chr11 (31252467-31251704)
	1-772, gnl\|Hg17\|chr18 (6765602-6766391)