Non-Coding RNA Search

Mixn-0017l01

Sequence:


               
               GGACTCACGGTGAGCAGCAGGACCAGGTCGGGTTTGAGCAGGTCCCTGGGCCACTGGTAT
ATAGGGTGGTGGGTGGGGGGCAGGTGCTGGAGACCCCCACTCACCTCAGAGGCTATGGTG
TAGGTGGCCGTGCTGTGCCAGTACCTGTCTATAATCACAGGCGATTTGGTAGATTCTTTA
GCTATTTCAGAAGCCACAATATAATTGCCCAAAGAGTAAAAAGCTCTTCTAATGATTGTT
GGTTCATCATCAAAGATCTTCCTCCACTGGCTGATGCAAGCAGGTGGCGACTTTAGGAGA
ACAGCCTTGAGTGAATCTGAAACTGACTGGGTCACGGTGGTTTTACCTGTGGCATCCAAT
CCTTCAATGGCGATAACTGGGAACTTCCCCTTCTGGACCTGCTCCGGGCACCGGTCAACC
ATGTCAAGCACGGCTTGGGCTTCGGGAATGAAGGATGTACACGCCTCCAAAACGGCGCGG
GCAGCCTCCCGGTGGGGGAAGACCCCGCAGCTGGCCAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTCACGGTGAGCAGCAGGACCAGGTCGGGTTTGAGCAGGTCCCTGGGCCACTGGTAT
ATAGGGTGGTGGGTGGGGGGCAGGTGCTGGAGACCCCCACTCACCTCAGAGGCTATGGTG
TAGGTGGCCGTGCTGTGCCAGTACCTGTCTATAATCACAGGCGATTTGGTAGATTCTTTA
GCTATTTCAGAAGCCACAATATAATTGCCCAAAGAGTAAAAAGCTCTTCTAATGATTGTT
GGTTCATCATCAAAGATCTTCCTCCACTGGCTGATGCAAGCAGGTGGCGACTTTAGGAGA
ACAGCCTTGAGTGAATCTGAAACTGACTGGGTCACGGTGGTTTTACCTGTGGCATCCAAT
CCTTCAATGGCGATAACTGGGAACTTCCCCTTCTGGACCTGCTCCGGGCACCGGTCAACC
ATGTCAAGCACGGCTTGGGCTTCGGGAATGAAGGATGTACACGCCTCCAAAACGGCGCGG
GCAGCCTCCCGGTGGGGGAAGACCCCGCAGCTGGCCAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57098097|ref|XP_532863.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57098097|ref|XP_532863.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.852319

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.852319

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-393, gnl|bosTau2|chr1 (43792853-43792463)
               

               
               1-393, gnl|Mm7|chr12 (24312969-24309812)
               


               
               142-349, gnl|bosTau2|chr11 (70627821-70628028)
               

               
               142-349, gnl|Hg17|chr2 (6951910-6952117)
               

               
               142-349, gnl|Mm7|chr12 (24310020-24309814)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-393, gnl|bosTau2|chr1 (43792853-43792463)
               

               
               1-393, gnl|Mm7|chr12 (24312969-24309812)
               


               
               142-349, gnl|bosTau2|chr11 (70627821-70628028)
               

               
               142-349, gnl|Hg17|chr2 (6951910-6952117)
               

               
               142-349, gnl|Mm7|chr12 (24310020-24309814)

	1-393, gnl\|bosTau2\|chr1 (43792853-43792463)
	1-393, gnl\|Mm7\|chr12 (24312969-24309812)

	142-349, gnl\|bosTau2\|chr11 (70627821-70628028)
	142-349, gnl\|Hg17\|chr2 (6951910-6952117)
	142-349, gnl\|Mm7\|chr12 (24310020-24309814)