Mixn-0018k05
|
GGTGCTGGAGCTCTACGGCAACAAGATGACCAGCATGGAGTGTCTGTGTGCCCACCCGCC
CCCGGGGCTCCAGCACTTGGGGTTGGGTCACAACAAGCTTCTGGGCCCCATGGAAAGCCT
ATACGTCACCAGCGATCACTGGCCCAACCTCGTCTCCCTGGACCTGGGCTTCAACGACCT
GACAGACCTGCAGAGCATGGTGGCCAGCCTGAGGACACTGCAGTACCTGAGGCTGCTGGT
GCTGCAGGGGAACCCGCTGGCCCTGGTGCCCTACTACCGGGGCTTCACCATCGACAGCCT
GTCTGGACTCTGCGTGCTGGACGACATCACCGTGGCGTCCAGTGAGAAGCATCAGTTCCG
GGGGCTTGGTCACAGCGGGGATCGTCAGGCCTTCTCCCAGCACCGAGCAGCTGGGCGAGG
ACATTCTTGAAGAGGTCATTGAAGAGACTGAAGACTCGGTGGAGTCTGGGCCTGAATCAT
TGTCACAGTCGGGGGGAGCTGGCAGAGTCTCTGGCCTCTGGGGGGATCAGCACCCTTGGC
GCGCTCCACAGACTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGTGCTGGAGCTCTACGGCAACAAGATGACCAGCATGGAGTGTCTGTGTGCCCACCCGCC
CCCGGGGCTCCAGCACTTGGGGTTGGGTCACAACAAGCTTCTGGGCCCCATGGAAAGCCT
ATACGTCACCAGCGATCACTGGCCCAACCTCGTCTCCCTGGACCTGGGCTTCAACGACCT
GACAGACCTGCAGAGCATGGTGGCCAGCCTGAGGACACTGCAGTACCTGAGGCTGCTGGT
GCTGCAGGGGAACCCGCTGGCCCTGGTGCCCTACTACCGGGGCTTCACCATCGACAGCCT
GTCTGGACTCTGCGTGCTGGACGACATCACCGTGGCGTCCAGTGAGAAGCATCAGTTCCG
GGGGCTTGGTCACAGCGGGGATCGTCAGGCCTTCTCCCAGCACCGAGCAGCTGGGCGAGG
ACATTCTTGAAGAGGTCATTGAAGAGACTGAAGACTCGGTGGAGTCTGGGCCTGAATCAT
TGTCACAGTCGGGGGGAGCTGGCAGAGTCTCTGGCCTCTGGGGGGATCAGCACCCTTGGC
GCGCTCCACAGACTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
175-289, - strand, RNAmicro p=0.964155 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
175-289, - strand, RNAmicro p=0.964155 |
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141-380, gnl|bosTau2|chr17 (29100255-29100016) |
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141-380, gnl|canFam2|chr26 (10175724-10175523) |
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141-380, gnl|fr1|chrUn (48562055-48561874) |
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141-380, gnl|hg17|chr12 (121199531-121199734) |
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141-380, gnl|Hg17|chr12 (121199556-121199795) |
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141-380, gnl|loxAfr1|scaffold_12122 (48879-49082) |
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141-380, gnl|mm7|chr5 (122742488-122742684) |
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141-380, gnl|Mm7|chr5 (122742506-122742745) |
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141-380, gnl|monDom2|scaffold_97 (2487629-2487828) |
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141-380, gnl|oryCun1|scaffold_210083 (93388-93591) |
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141-380, gnl|panTro1|chr10 (124261218-124261421) |
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141-380, gnl|rheMac2|chr11 (123434255-123434458) |
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141-380, gnl|rn3|chr12 (34084220-34084021) |
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141-380, gnl|tetNig1|chr12 (7034907-7034725) |
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141-380, gnl|xenTro1|scaffold_791 (400871-401059) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
141-380, gnl|bosTau2|chr17 (29100255-29100016) |
|
141-380, gnl|canFam2|chr26 (10175724-10175523) |
|
141-380, gnl|fr1|chrUn (48562055-48561874) |
|
141-380, gnl|hg17|chr12 (121199531-121199734) |
|
141-380, gnl|Hg17|chr12 (121199556-121199795) |
|
141-380, gnl|loxAfr1|scaffold_12122 (48879-49082) |
|
141-380, gnl|mm7|chr5 (122742488-122742684) |
|
141-380, gnl|Mm7|chr5 (122742506-122742745) |
|
141-380, gnl|monDom2|scaffold_97 (2487629-2487828) |
|
141-380, gnl|oryCun1|scaffold_210083 (93388-93591) |
|
141-380, gnl|panTro1|chr10 (124261218-124261421) |
|
141-380, gnl|rheMac2|chr11 (123434255-123434458) |
|
141-380, gnl|rn3|chr12 (34084220-34084021) |
|
141-380, gnl|tetNig1|chr12 (7034907-7034725) |
|
141-380, gnl|xenTro1|scaffold_791 (400871-401059) |
