Non-Coding RNA Search

Mixn-0019e20

Sequence:


               
               TTTTTTTTTTATGGGAAATAAGGTCATCAGGAATGTATGTAATCTACTTAACATATTAAG
TTTTCAACCCATTGTGGGAGGTTGGGGGGCTAGCAATTAATATCATAATCATAAAATAGT
GGTATCCTTCTCTAAAACAGGCACCCACTGGATAATATTTACCTAACCAAGGTGGAAAAA
AAACTATTTTAATGGGAAATAATAAAATACTTCTTTCCAAGAATTTTAAATTGTCAAACC
TCTGTTTAGAGAATTGGGGATTACCTCTTTCCTGACCTGTACCAGCTACTAAGAAATGAC
GCTTCTTCACTGGATGTTGCTAAACCTGAAATAAATCCTTGAACAAATGGTTAAGCCAGT
TTTGAAACCATAAATTTTTTTATGAATCAAAGAACATACCTAATGTGTCCAAGCTCTTTT
TTCCATATTTATTCCTTCCTTTGTTTTCTAACATTGTTAAGAATGACACGTAATTCTGAT
ATAAATTGCTTATTTCGTTTGTCAGAATCATAGGTTACACGAAGTTGAAATGCCCCAAAG
TAAGGAGACAATATGCAATGTTCTACCATAGATGCAAACTTAAGCCATTTTCGTTTTGGA
GGAAAACAGGTTTACCTATACCTACCCTCACCCTGCCCTACCCCAACCCCCCTGAAAAAT
CAACAAAATTTAAAGGGCTCACAGATAAAGCAAAGATAAGAAGGCTACAGGGTGTGGCCC
TAAAAGGACAAAAGACAAAAGACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTATGGGAAATAAGGTCATCAGGAATGTATGTAATCTACTTAACATATTAAG
TTTTCAACCCATTGTGGGAGGTTGGGGGGCTAGCAATTAATATCATAATCATAAAATAGT
GGTATCCTTCTCTAAAACAGGCACCCACTGGATAATATTTACCTAACCAAGGTGGAAAAA
AAACTATTTTAATGGGAAATAATAAAATACTTCTTTCCAAGAATTTTAAATTGTCAAACC
TCTGTTTAGAGAATTGGGGATTACCTCTTTCCTGACCTGTACCAGCTACTAAGAAATGAC
GCTTCTTCACTGGATGTTGCTAAACCTGAAATAAATCCTTGAACAAATGGTTAAGCCAGT
TTTGAAACCATAAATTTTTTTATGAATCAAAGAACATACCTAATGTGTCCAAGCTCTTTT
TTCCATATTTATTCCTTCCTTTGTTTTCTAACATTGTTAAGAATGACACGTAATTCTGAT
ATAAATTGCTTATTTCGTTTGTCAGAATCATAGGTTACACGAAGTTGAAATGCCCCAAAG
TAAGGAGACAATATGCAATGTTCTACCATAGATGCAAACTTAAGCCATTTTCGTTTTGGA
GGAAAACAGGTTTACCTATACCTACCCTCACCCTGCCCTACCCCAACCCCCCTGAAAAAT
CAACAAAATTTAAAGGGCTCACAGATAAAGCAAAGATAAGAAGGCTACAGGGTGTGGCCC
TAAAAGGACAAAAGACAAAAGACAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               419-511, - strand, RNAz p=0.932678

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-511, - strand, RNAz p=0.932678

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-138, gnl|bosTau2|chr12 (11815063-11815198)
               

               
               4-138, gnl|Hg17|chr13 (39012695-39012847)
               

               
               4-138, gnl|Mm7|chr3 (53201590-53201267)
               


               
               178-633, gnl|bosTau2|chr12 (11815206-11815664)
               

               
               178-633, gnl|Hg17|chr13 (39012857-39020116)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-138, gnl|bosTau2|chr12 (11815063-11815198)
               

               
               4-138, gnl|Hg17|chr13 (39012695-39012847)
               

               
               4-138, gnl|Mm7|chr3 (53201590-53201267)
               


               
               178-633, gnl|bosTau2|chr12 (11815206-11815664)
               

               
               178-633, gnl|Hg17|chr13 (39012857-39020116)

	4-138, gnl\|bosTau2\|chr12 (11815063-11815198)
	4-138, gnl\|Hg17\|chr13 (39012695-39012847)
	4-138, gnl\|Mm7\|chr3 (53201590-53201267)

	178-633, gnl\|bosTau2\|chr12 (11815206-11815664)
	178-633, gnl\|Hg17\|chr13 (39012857-39020116)