Non-Coding RNA Search

Mixn-0019n19

Sequence:


               
               TTTTTTTTTTATTACAGTGAATTTTTTAATCACTAAATCAATCTGGTGATAACTATAATT
CTTTTTCCAACTAGGAGTTTCCCGGGTTGAACGCAAGGTTTCTCCGAGGTAACGACACTC
AGCAGCAGCAGCGGGGAAACCTCGCTGAGTTTGTTCCCATTTAGAATGGACCATGTCCTC
CTGTTAATAATCTCTGAGGCCGAGTCTGCGGTTTGCGGCTCATTCAAGCTCCGTGCGCTT
TCTGCGGAATCTGAAAAGAAAAAGAAAAGAAAAGGGAAAAAAAGAGGCTGATGTCGTTCT
GAAGAGGTCATTGGCTTCCAGGACTACCAGTCTCCTCTGGAAGGTGCCAAAGGAATGCTG
TCAGCCAGGGATCCTGGCTTGTCAGTCCCTGAGCTGCCTCCTTGCCTGCCAGAACCCAAG
GCAGAGATCTGGGTGGTTCCGAACGCCTGGGCATCACATTCTTGCGTTGTATCTATAAAA
TAAAACTGGGCCCTTGAACCAACTCCTTTGATTCCTCCAGGGACGTGCAGGGAGGGCCTG
GGAGAGTATTTTGTAAACTGTATGGCGCAGTGACCCGGTAAGTGAAAGGCGAGACATTCT
GAGGCATTTCTGGCCTGCAAACCCGAAAACCTGAAAGTTGCACTTGGATCCAGGCAGCAT
CCCCCGAAAAGCTTCCCCAACCAGACTGGCCGCCCCTTTGTGCCCCGAGACGTCGCAGGT
TAGAGGCCCTCAGCTGGGTGGCTCTGGGCCTGGGCGTTGAGCTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTATTACAGTGAATTTTTTAATCACTAAATCAATCTGGTGATAACTATAATT
CTTTTTCCAACTAGGAGTTTCCCGGGTTGAACGCAAGGTTTCTCCGAGGTAACGACACTC
AGCAGCAGCAGCGGGGAAACCTCGCTGAGTTTGTTCCCATTTAGAATGGACCATGTCCTC
CTGTTAATAATCTCTGAGGCCGAGTCTGCGGTTTGCGGCTCATTCAAGCTCCGTGCGCTT
TCTGCGGAATCTGAAAAGAAAAAGAAAAGAAAAGGGAAAAAAAGAGGCTGATGTCGTTCT
GAAGAGGTCATTGGCTTCCAGGACTACCAGTCTCCTCTGGAAGGTGCCAAAGGAATGCTG
TCAGCCAGGGATCCTGGCTTGTCAGTCCCTGAGCTGCCTCCTTGCCTGCCAGAACCCAAG
GCAGAGATCTGGGTGGTTCCGAACGCCTGGGCATCACATTCTTGCGTTGTATCTATAAAA
TAAAACTGGGCCCTTGAACCAACTCCTTTGATTCCTCCAGGGACGTGCAGGGAGGGCCTG
GGAGAGTATTTTGTAAACTGTATGGCGCAGTGACCCGGTAAGTGAAAGGCGAGACATTCT
GAGGCATTTCTGGCCTGCAAACCCGAAAACCTGAAAGTTGCACTTGGATCCAGGCAGCAT
CCCCCGAAAAGCTTCCCCAACCAGACTGGCCGCCCCTTTGTGCCCCGAGACGTCGCAGGT
TAGAGGCCCTCAGCTGGGTGGCTCTGGGCCTGGGCGTTGAGCTTTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               459-562, - strand, RNAz p=0.508205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-562, - strand, RNAz p=0.508205

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-263, gnl|bosTau2|chr18 (24938684-24938429)
               

               
               5-263, gnl|Hg17|chr16 (53914152-53914398)
               


               
               312-729, gnl|bosTau2|chr18 (24938422-24938002)
               

               
               312-729, gnl|Hg17|chr16 (53914405-53914818)
               

               
               312-729, gnl|Mm7|chr8 (91266292-91266695)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-263, gnl|bosTau2|chr18 (24938684-24938429)
               

               
               5-263, gnl|Hg17|chr16 (53914152-53914398)
               


               
               312-729, gnl|bosTau2|chr18 (24938422-24938002)
               

               
               312-729, gnl|Hg17|chr16 (53914405-53914818)
               

               
               312-729, gnl|Mm7|chr8 (91266292-91266695)

	5-263, gnl\|bosTau2\|chr18 (24938684-24938429)
	5-263, gnl\|Hg17\|chr16 (53914152-53914398)

	312-729, gnl\|bosTau2\|chr18 (24938422-24938002)
	312-729, gnl\|Hg17\|chr16 (53914405-53914818)
	312-729, gnl\|Mm7\|chr8 (91266292-91266695)