Non-Coding RNA Search

Mixn-0020j16

Sequence:


               
               TGAAGAAAGAGTTTCTGAGGGCGCATGGCTTGCCTGCACCCTGAGGAGACCCACCCCAGC
GCAGTCTTGATGGGGGTGGGGAAGAGCTTTTGCTGGACCCCTGGACCAGAGTGCTTTCTT
GGCTGCCCGCAGATGCCTGAAAACGTGGGTGGGCCCCCAACCGTGTCCCCGGGATCCTGG
GGGAATATTGGAGTCTTTTCTGGGTTAAAGCAACACTCCTAAATCCTTTCTCCCAAGAGG
GGGCCTATTGCTGTCCTAGCTTCCTTTCCCCAGATTACAGGGCCTCCATCGGCCCCGTGG
AGTGGGCCATGGGCCAGTCAGAGCCTCTAGGTCTAGTGGCTTCTCGACCTGGGAGTTTTG
ATGGGTGAGGGTGGGTGGGCCTAAGACCTAAGTAATTGCCGAGAACGTGGAACAGCGTTC
GTGATGGCAGAATTTGAGGGACCACCAGGAAGGGCCTGGGCAGAGCCACAAACCCTGAAG
CTGCCCTTCTGAACTCTTTACCCTCTTCGCAGGACCAGAGTCCCCGACCTCCCCCCACCC
CTGGTGGGGGCGAAAGGGGNTTGGGGGAGGGCTAGAGCGGGACCGCGCCCTCGGAAGCGG
GGCCAGGCAGCCGGCTGAGCCAGGCCCCGCTCCGCCCCTTGGGGCTCTCCCCAGGGTAAT
GCTTCGGAGGCTTCCAACGCATTCCGGCAGCGCAGAGCGCAGCCGCCCAGCCTCCCGCTG
TAGCCCAATTCCCGCCCCGCAGTTCGCTTCTGCGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAAAGAGTTTCTGAGGGCGCATGGCTTGCCTGCACCCTGAGGAGACCCACCCCAGC
GCAGTCTTGATGGGGGTGGGGAAGAGCTTTTGCTGGACCCCTGGACCAGAGTGCTTTCTT
GGCTGCCCGCAGATGCCTGAAAACGTGGGTGGGCCCCCAACCGTGTCCCCGGGATCCTGG
GGGAATATTGGAGTCTTTTCTGGGTTAAAGCAACACTCCTAAATCCTTTCTCCCAAGAGG
GGGCCTATTGCTGTCCTAGCTTCCTTTCCCCAGATTACAGGGCCTCCATCGGCCCCGTGG
AGTGGGCCATGGGCCAGTCAGAGCCTCTAGGTCTAGTGGCTTCTCGACCTGGGAGTTTTG
ATGGGTGAGGGTGGGTGGGCCTAAGACCTAAGTAATTGCCGAGAACGTGGAACAGCGTTC
GTGATGGCAGAATTTGAGGGACCACCAGGAAGGGCCTGGGCAGAGCCACAAACCCTGAAG
CTGCCCTTCTGAACTCTTTACCCTCTTCGCAGGACCAGAGTCCCCGACCTCCCCCCACCC
CTGGTGGGGGCGAAAGGGGNTTGGGGGAGGGCTAGAGCGGGACCGCGCCCTCGGAAGCGG
GGCCAGGCAGCCGGCTGAGCCAGGCCCCGCTCCGCCCCTTGGGGCTCTCCCCAGGGTAAT
GCTTCGGAGGCTTCCAACGCATTCCGGCAGCGCAGAGCGCAGCCGCCCAGCCTCCCGCTG
TAGCCCAATTCCCGCCCCGCAGTTCGCTTCTGCGGCTCC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               231-347, + strand, RNAz p=0.652684
               

               
               258-365, - strand, RNAz p=0.998918
               

               
               442-553, - strand, RNAz p=0.796611

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-347, + strand, RNAz p=0.652684
               

               
               258-365, - strand, RNAz p=0.998918
               

               
               442-553, - strand, RNAz p=0.796611

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               79-757, gnl|bosTau2|chr13 (55529899-55530572)
               

               
               79-757, gnl|canFam2|chr24 (35590757-35591213)
               

               
               79-757, gnl|hg17|chr20 (43370469-43370935)
               

               
               79-757, gnl|Hg17|chr20 (43371169-43370505)
               

               
               79-757, gnl|mm7|chr2 (164145385-164145862)
               

               
               79-757, gnl|Mm7|chr2 (164146044-164145426)
               

               
               79-757, gnl|panTro1|chr21 (45855689-45856154)
               

               
               79-757, gnl|rheMac2|chr10 (19144440-19143976)
               

               
               79-757, gnl|rn3|chr3 (155332760-155333233)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-757, gnl|bosTau2|chr13 (55529899-55530572)
               

               
               79-757, gnl|canFam2|chr24 (35590757-35591213)
               

               
               79-757, gnl|hg17|chr20 (43370469-43370935)
               

               
               79-757, gnl|Hg17|chr20 (43371169-43370505)
               

               
               79-757, gnl|mm7|chr2 (164145385-164145862)
               

               
               79-757, gnl|Mm7|chr2 (164146044-164145426)
               

               
               79-757, gnl|panTro1|chr21 (45855689-45856154)
               

               
               79-757, gnl|rheMac2|chr10 (19144440-19143976)
               

               
               79-757, gnl|rn3|chr3 (155332760-155333233)

	231-347, + strand, RNAz p=0.652684
	258-365, - strand, RNAz p=0.998918
	442-553, - strand, RNAz p=0.796611

	79-757, gnl\|bosTau2\|chr13 (55529899-55530572)
	79-757, gnl\|canFam2\|chr24 (35590757-35591213)
	79-757, gnl\|hg17\|chr20 (43370469-43370935)
	79-757, gnl\|Hg17\|chr20 (43371169-43370505)
	79-757, gnl\|mm7\|chr2 (164145385-164145862)
	79-757, gnl\|Mm7\|chr2 (164146044-164145426)
	79-757, gnl\|panTro1\|chr21 (45855689-45856154)
	79-757, gnl\|rheMac2\|chr10 (19144440-19143976)
	79-757, gnl\|rn3\|chr3 (155332760-155333233)