Non-Coding RNA Search

Mixn-0020p18

Sequence:


               
               TCCCAAAAGCATAGTGTAAACAATGTCTCTTAACCAATTAAGTCTCTGAATCCAGTAATT
TACATACTTACCTAGCAGAGTTTTTGTTTGTTTTGATTTGCAGAGGAAAGCTATGTCACC
ACATGTCTACTCAAATAAATTAACATTGCCATCTAAACTGACTCATTTGAAAGGAACAAG
TCTTCATAGCAAAAAGAGTAACATATGCGTGCCAAAAACATTGAAATGGACAGAGTTCTC
ATTTTCTTCTTGTTTTAACGATGCCATCTCTCGACTTTTACATGCGCCCTGAGTCAAGCA
CAGATGCTAAAGTGTAGAATCATAGAAAATGAGAGGATAGGGTGCGGTGAAGAGAAGGGA
CTGGAAACGAGGAAAGGAGTAGGAAAGGCACGATGCATTTCTCAAGGTAGAAATTTAGGG
AGGAAGGACCCCTGACAAGGGAATTCCAACTTGAAAGACTATTTTCCCCAGCTAGGTGGC
ATCTAGAACCTATGATTGCCACACAGAGAAAAGGAAAAAGGAAAAAAGGAATATAGCATT
TTCTCCTTAGGGCAGAATGGGTGATTCTCTTTAATAAATGCATGGACTTAAATTATGGAA
CATCAGATGTTTATTGTCAAAGGAAACTGTAAGATAAACAGTAAAAAATCTTTTATTGGT
TCGATATTATTGTGGCTCTTATGTGTATTTCATAAGACAGAACATGGACGTCTGATACAA
TGCTCCAAGCACAACTTTCTAAAGAAATCAATAATCATTTGCTCTGAGAGGACTGTACAT
TCAATAGTGGACAATCCTGAAAATCTTTTTTCTCCAGTGACGGCATTGTGTTCTTCAGTG
ATTGCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAAAAGCATAGTGTAAACAATGTCTCTTAACCAATTAAGTCTCTGAATCCAGTAATT
TACATACTTACCTAGCAGAGTTTTTGTTTGTTTTGATTTGCAGAGGAAAGCTATGTCACC
ACATGTCTACTCAAATAAATTAACATTGCCATCTAAACTGACTCATTTGAAAGGAACAAG
TCTTCATAGCAAAAAGAGTAACATATGCGTGCCAAAAACATTGAAATGGACAGAGTTCTC
ATTTTCTTCTTGTTTTAACGATGCCATCTCTCGACTTTTACATGCGCCCTGAGTCAAGCA
CAGATGCTAAAGTGTAGAATCATAGAAAATGAGAGGATAGGGTGCGGTGAAGAGAAGGGA
CTGGAAACGAGGAAAGGAGTAGGAAAGGCACGATGCATTTCTCAAGGTAGAAATTTAGGG
AGGAAGGACCCCTGACAAGGGAATTCCAACTTGAAAGACTATTTTCCCCAGCTAGGTGGC
ATCTAGAACCTATGATTGCCACACAGAGAAAAGGAAAAAGGAAAAAAGGAATATAGCATT
TTCTCCTTAGGGCAGAATGGGTGATTCTCTTTAATAAATGCATGGACTTAAATTATGGAA
CATCAGATGTTTATTGTCAAAGGAAACTGTAAGATAAACAGTAAAAAATCTTTTATTGGT
TCGATATTATTGTGGCTCTTATGTGTATTTCATAAGACAGAACATGGACGTCTGATACAA
TGCTCCAAGCACAACTTTCTAAAGAAATCAATAATCATTTGCTCTGAGAGGACTGTACAT
TCAATAGTGGACAATCCTGAAAATCTTTTTTCTCCAGTGACGGCATTGTGTTCTTCAGTG
ATTGCAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               404-523, - strand, RNAz p=0.926731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-523, - strand, RNAz p=0.926731

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-853, gnl|bosTau2|chr4 (66465187-66466055)
               

               
               1-853, gnl|Hg17|chr13 (32784933-32784085)
               

               
               1-853, gnl|Mm7|chr5 (150135773-150134840)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-853, gnl|bosTau2|chr4 (66465187-66466055)
               

               
               1-853, gnl|Hg17|chr13 (32784933-32784085)
               

               
               1-853, gnl|Mm7|chr5 (150135773-150134840)

	1-853, gnl\|bosTau2\|chr4 (66465187-66466055)
	1-853, gnl\|Hg17\|chr13 (32784933-32784085)
	1-853, gnl\|Mm7\|chr5 (150135773-150134840)