Non-Coding RNA Search

Mixn-0021e01

Sequence:


               
               GGCAAAATTCAGGCAAGGAAATTTGAGTATGCGTTCCTGCAGAGGTTTTAGAGTCACACT
AACGGATTACACAAAAATAATCAGGGCTAAGATAGGTGGTGGGGCAGGCCAAAAGATGCC
AAATTTAGGAGAAATGGCAAAAAAGTGGTTTACCTCTTTCGCCCCAGGGTGGAGCAACAG
AGCAAATTCGGTAAGATGGCGGAATTGTCCAAAAGCAAAGTATTTTTTATACCTTTTTCT
AAAGTAGAGGTAATCTCTTAATTATGTGGGTAGCATGAAGGAGGTCCGGGCAATGCCTGG
GGCCTAAAAGCTGAGAGAAAGGCGCGGAGGCGGCAAAGACCGTACTTAACACATACTCAA
CGTCGGAGGATTTGGTTTGACCATTATTGTCTATAGCAAAATACTCTCAATAGAGCAGAC
AGGCAACATAAACGCATAGTGCTGGCAGGGAGACTAATGGGAGAAAGGAATGGGAGTAAT
GTGGCATCCCACACTGGAGAAAACCAGAGGTCAAAGGGACCCCCGACACTGGCCTCCCGA
AAAAACCCCAAGAGATGCTACCTCGCCACTCTCCTCTGCGGTCCAACCCATGCAAAACTC
CCGCTTGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAAATTCAGGCAAGGAAATTTGAGTATGCGTTCCTGCAGAGGTTTTAGAGTCACACT
AACGGATTACACAAAAATAATCAGGGCTAAGATAGGTGGTGGGGCAGGCCAAAAGATGCC
AAATTTAGGAGAAATGGCAAAAAAGTGGTTTACCTCTTTCGCCCCAGGGTGGAGCAACAG
AGCAAATTCGGTAAGATGGCGGAATTGTCCAAAAGCAAAGTATTTTTTATACCTTTTTCT
AAAGTAGAGGTAATCTCTTAATTATGTGGGTAGCATGAAGGAGGTCCGGGCAATGCCTGG
GGCCTAAAAGCTGAGAGAAAGGCGCGGAGGCGGCAAAGACCGTACTTAACACATACTCAA
CGTCGGAGGATTTGGTTTGACCATTATTGTCTATAGCAAAATACTCTCAATAGAGCAGAC
AGGCAACATAAACGCATAGTGCTGGCAGGGAGACTAATGGGAGAAAGGAATGGGAGTAAT
GTGGCATCCCACACTGGAGAAAACCAGAGGTCAAAGGGACCCCCGACACTGGCCTCCCGA
AAAAACCCCAAGAGATGCTACCTCGCCACTCTCCTCTGCGGTCCAACCCATGCAAAACTC
CCGCTTGGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               276-386, + strand, RNAz p=0.630203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-386, + strand, RNAz p=0.630203

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               40-611, gnl|bosTau2|chr6 (864606-864045)
               

               
               40-611, gnl|canFam2|chr19 (21327771-21327210)
               

               
               40-611, gnl|echTel1|scaffold_301262 (50536-50952)
               

               
               40-611, gnl|hg17|chr4 (123101434-123102005)
               

               
               40-611, gnl|Hg17|chr4 (123101584-123102144)
               

               
               40-611, gnl|mm7|chr3 (36381783-36382270)
               

               
               40-611, gnl|Mm7|chr3 (36381908-36382392)
               

               
               40-611, gnl|panTro1|chr3 (139935993-139936566)
               

               
               40-611, gnl|rheMac2|chr5 (114190584-114191159)
               

               
               40-611, gnl|rn3|chr2 (123013150-123013627)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-611, gnl|bosTau2|chr6 (864606-864045)
               

               
               40-611, gnl|canFam2|chr19 (21327771-21327210)
               

               
               40-611, gnl|echTel1|scaffold_301262 (50536-50952)
               

               
               40-611, gnl|hg17|chr4 (123101434-123102005)
               

               
               40-611, gnl|Hg17|chr4 (123101584-123102144)
               

               
               40-611, gnl|mm7|chr3 (36381783-36382270)
               

               
               40-611, gnl|Mm7|chr3 (36381908-36382392)
               

               
               40-611, gnl|panTro1|chr3 (139935993-139936566)
               

               
               40-611, gnl|rheMac2|chr5 (114190584-114191159)
               

               
               40-611, gnl|rn3|chr2 (123013150-123013627)

	40-611, gnl\|bosTau2\|chr6 (864606-864045)
	40-611, gnl\|canFam2\|chr19 (21327771-21327210)
	40-611, gnl\|echTel1\|scaffold_301262 (50536-50952)
	40-611, gnl\|hg17\|chr4 (123101434-123102005)
	40-611, gnl\|Hg17\|chr4 (123101584-123102144)
	40-611, gnl\|mm7\|chr3 (36381783-36382270)
	40-611, gnl\|Mm7\|chr3 (36381908-36382392)
	40-611, gnl\|panTro1\|chr3 (139935993-139936566)
	40-611, gnl\|rheMac2\|chr5 (114190584-114191159)
	40-611, gnl\|rn3\|chr2 (123013150-123013627)