Non-Coding RNA Search

Mixn-0021f20

Sequence:


               
               TTTTTTTTTTCCCTCCCTTCTCCCACCCCCTTCTCTCTGCTGATCCCCGCGACCTGCGTT
TTCCTGGGGGTCCGCAACTCTGGACCCAAGGACCCGGCCACCCCCTCAGGACAACTCGCA
TCTCAGCAGAGCAGCCCCTGGCCCAGGTCCACCCATAGGCAGATGGCCTCCGCCCCCACC
CCCGGGAGGATTTCTTAATGGGGTGAAAATGCCAGTCCCCGAAGCCAGGGTTCCGGGACC
CCCGGGGCCGAGCTGGGCGCGGGAGCCCCGCAGGGGCGGAGAGACCCGGCGAGCCTGAAG
AAGTGGAGGAGAGATCTACACAACTTCAGTGGGGCGTACCCATCCTGTCTTCCTGTTCAC
CCTCCTCTGCCCCCAACTCCATCTCTGAGACCTCCTGCCCCCCCCACTTGAAAAAAGAAG
TCGCTCGCGGGCTCTGTCTGCAGAGAGCCAGGGTGAGAGCGGGCAAGGCGAAAGAGCGAC
CTCGGTCGTGGGCAAGTAGCTTGTTTTTACGTCCTTCAATAAAAATTTTATGAGGATCAA
AAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTCCCTCCCTTCTCCCACCCCCTTCTCTCTGCTGATCCCCGCGACCTGCGTT
TTCCTGGGGGTCCGCAACTCTGGACCCAAGGACCCGGCCACCCCCTCAGGACAACTCGCA
TCTCAGCAGAGCAGCCCCTGGCCCAGGTCCACCCATAGGCAGATGGCCTCCGCCCCCACC
CCCGGGAGGATTTCTTAATGGGGTGAAAATGCCAGTCCCCGAAGCCAGGGTTCCGGGACC
CCCGGGGCCGAGCTGGGCGCGGGAGCCCCGCAGGGGCGGAGAGACCCGGCGAGCCTGAAG
AAGTGGAGGAGAGATCTACACAACTTCAGTGGGGCGTACCCATCCTGTCTTCCTGTTCAC
CCTCCTCTGCCCCCAACTCCATCTCTGAGACCTCCTGCCCCCCCCACTTGAAAAAAGAAG
TCGCTCGCGGGCTCTGTCTGCAGAGAGCCAGGGTGAGAGCGGGCAAGGCGAAAGAGCGAC
CTCGGTCGTGGGCAAGTAGCTTGTTTTTACGTCCTTCAATAAAAATTTTATGAGGATCAA
AAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-267, - strand, RNAz p=0.939524

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-267, - strand, RNAz p=0.939524

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               111-205, - strand, RNAmicro p=0.968214

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               111-205, - strand, RNAmicro p=0.968214

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-293, gnl|bosTau2|chr5 (16814706-16814993)
               

               
               3-293, gnl|Hg17|chr12 (52680044-52679760)
               

               
               3-293, gnl|Mm7|chr15 (102967615-102967311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-293, gnl|bosTau2|chr5 (16814706-16814993)
               

               
               3-293, gnl|Hg17|chr12 (52680044-52679760)
               

               
               3-293, gnl|Mm7|chr15 (102967615-102967311)

	3-293, gnl\|bosTau2\|chr5 (16814706-16814993)
	3-293, gnl\|Hg17\|chr12 (52680044-52679760)
	3-293, gnl\|Mm7\|chr15 (102967615-102967311)