Non-Coding RNA Search

Mixn-0021i21

Sequence:


               
               TCGGACTGCAGGGCCTCATGGAAAGCAATGTCATGCTGGCTAAGGAGGCTGAACTTGGAC
TTTCGGTAAAAAGTAGCGAGGCCTTCATGCTGCTTGATTCGAAACACGCCCTCCAGCCCA
AAGGCCTCGAGGGCCGGCACCAAGCTGTCTGTAAACACGTCGCGGTCAACTTCCTGCAAA
CAGATGAGGTCGGCGTTGTAGCCCGTGAGTTCCTTTTGGATAAGGTTCTGGCGGTAGTCG
AGTTCCAGGGCGTAAGGGGCACAGTACGGGTACAGGACCGTCCGTGAGAACTCAGTCTGG
GCATATGTGTCGGCCAGAAGGTTGTAGGAGACTGTGCGGATGAGGGCGTCGTCAGTCACC
TTCTTCGTGTAGAGATGCCGGTGGTCAAAGGTGCACGTGCCGGGCCCGGCCTCCACCGAA
CACACACTTTCCAATTCTCGGCTTGGTCCGAAGCGCTGCCCATTGCCTGGGGTACAATGA
AGTTTGAGCCGTAGCCCGATGTCAGCATTGGACGGGGTGTAGACGCGCTCGTTCACACCC
GTCTCGGTCCAACCAGGAGAAGGTGAAGAGGGAGACAATGACGAGTGGCCTCCGCCCTCA
GGCTCCACCGCTGTAGGTTTGGTTTCCTTGTACCAGCGGAAGAGGGAGCCGGCGGGATCC
CCAAATTCGAGGCCGAGCTTGGGGCACACCGGGAAGCCGGCCATGATGTAGCGCGGCAAC
TGCAGCTCGGTGAGGGAGGGCGGGTTGCGCTCTACCTTGTATTTGACATCGCCGATCTGC
AGCACCGCACCGTCCTGCCNAGCGTCCACATTGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGACTGCAGGGCCTCATGGAAAGCAATGTCATGCTGGCTAAGGAGGCTGAACTTGGAC
TTTCGGTAAAAAGTAGCGAGGCCTTCATGCTGCTTGATTCGAAACACGCCCTCCAGCCCA
AAGGCCTCGAGGGCCGGCACCAAGCTGTCTGTAAACACGTCGCGGTCAACTTCCTGCAAA
CAGATGAGGTCGGCGTTGTAGCCCGTGAGTTCCTTTTGGATAAGGTTCTGGCGGTAGTCG
AGTTCCAGGGCGTAAGGGGCACAGTACGGGTACAGGACCGTCCGTGAGAACTCAGTCTGG
GCATATGTGTCGGCCAGAAGGTTGTAGGAGACTGTGCGGATGAGGGCGTCGTCAGTCACC
TTCTTCGTGTAGAGATGCCGGTGGTCAAAGGTGCACGTGCCGGGCCCGGCCTCCACCGAA
CACACACTTTCCAATTCTCGGCTTGGTCCGAAGCGCTGCCCATTGCCTGGGGTACAATGA
AGTTTGAGCCGTAGCCCGATGTCAGCATTGGACGGGGTGTAGACGCGCTCGTTCACACCC
GTCTCGGTCCAACCAGGAGAAGGTGAAGAGGGAGACAATGACGAGTGGCCTCCGCCCTCA
GGCTCCACCGCTGTAGGTTTGGTTTCCTTGTACCAGCGGAAGAGGGAGCCGGCGGGATCC
CCAAATTCGAGGCCGAGCTTGGGGCACACCGGGAAGCCGGCCATGATGTAGCGCGGCAAC
TGCAGCTCGGTGAGGGAGGGCGGGTTGCGCTCTACCTTGTATTTGACATCGCCGATCTGC
AGCACCGCACCGTCCTGCCNAGCGTCCACATTGAGCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|23273311|gb|AAH34978.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23273311|gb|AAH34978.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.746597
               

               
               480-799, - strand, RNAz p=0.873333

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.746597
               

               
               480-799, - strand, RNAz p=0.873333

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-818, gnl|bosTau2|chr22 (33505277-33506094)
               

               
               1-818, gnl|Hg17|chr3 (57518369-57517552)
               

               
               1-818, gnl|Mm7|chr14 (24059100-24059917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-818, gnl|bosTau2|chr22 (33505277-33506094)
               

               
               1-818, gnl|Hg17|chr3 (57518369-57517552)
               

               
               1-818, gnl|Mm7|chr14 (24059100-24059917)

	1-119, - strand, RNAz p=0.746597
	480-799, - strand, RNAz p=0.873333

	1-818, gnl\|bosTau2\|chr22 (33505277-33506094)
	1-818, gnl\|Hg17\|chr3 (57518369-57517552)
	1-818, gnl\|Mm7\|chr14 (24059100-24059917)