Non-Coding RNA Search

Mixn-0022m04

Sequence:


               
               AGAGAGCCAACATTTTAAAAATCTTAGGGCTTCCCTACCAAATGCTTTTAGGGTTTGGGG
GAAATTTGGTCAAGTCCATTGGAGTGTGGCTTGAGTGTGAAAATAATCTGCAGTGGGTAT
TATAGCAGAAAAAGGTTGAGGCCAGTTGCCTAAGGAAAGCACATAAGAGCAGATCAAAAT
GATGGGCAGTGCCATTCTTTCCCACATGAGACTGAAGAAGAAAATGTTCTATAATATACT
GTGTGGGTGAAATTCTCGGGAAGCAGCTGGCGGAGACTTGGTGCTCCCCAGGTGCCCACA
TGCCCTCTACCTTCCCCAGCCTCTGCTGCAGTTAGGTTGGGCCAGTGACCAGGTTCCGAT
CAGGGGGCACATAGGTTAAAGTGGTTCAAGTGGTTAAGTTAAAGGTTAAAGCCACTTCAA
GTCCTGGTCCTTAAAATGATCCCCCACATTCCTCCGGTCCTTGCTTCTCTTGCTGTGCTA
AGAATGGAGATGACCTGTTGCACCTGGCTTAATGCAAGACGGAAGCAGCCCAGATCTTGA
GCTGATGCTTGGAAAACCACTCCACTTGCATCAGAGGTGATGCAAGTACAAAATTAGCCT
CTGGGTTGCTAAGCTACCATGACTGGATTTCTGAGATAACTGGGTATAGAAAAACTCTNC
ATGCATAAGCCCAGNACCCCCTTCCTGCTCTCNTCCCTACTGGACGACCTTCCCTAGGAG
ACTTTCAACCTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGCCAACATTTTAAAAATCTTAGGGCTTCCCTACCAAATGCTTTTAGGGTTTGGGG
GAAATTTGGTCAAGTCCATTGGAGTGTGGCTTGAGTGTGAAAATAATCTGCAGTGGGTAT
TATAGCAGAAAAAGGTTGAGGCCAGTTGCCTAAGGAAAGCACATAAGAGCAGATCAAAAT
GATGGGCAGTGCCATTCTTTCCCACATGAGACTGAAGAAGAAAATGTTCTATAATATACT
GTGTGGGTGAAATTCTCGGGAAGCAGCTGGCGGAGACTTGGTGCTCCCCAGGTGCCCACA
TGCCCTCTACCTTCCCCAGCCTCTGCTGCAGTTAGGTTGGGCCAGTGACCAGGTTCCGAT
CAGGGGGCACATAGGTTAAAGTGGTTCAAGTGGTTAAGTTAAAGGTTAAAGCCACTTCAA
GTCCTGGTCCTTAAAATGATCCCCCACATTCCTCCGGTCCTTGCTTCTCTTGCTGTGCTA
AGAATGGAGATGACCTGTTGCACCTGGCTTAATGCAAGACGGAAGCAGCCCAGATCTTGA
GCTGATGCTTGGAAAACCACTCCACTTGCATCAGAGGTGATGCAAGTACAAAATTAGCCT
CTGGGTTGCTAAGCTACCATGACTGGATTTCTGAGATAACTGGGTATAGAAAAACTCTNC
ATGCATAAGCCCAGNACCCCCTTCCTGCTCTCNTCCCTACTGGACGACCTTCCCTAGGAG
ACTTTCAACCTTTCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               314-432, - strand, RNAz p=0.971704
               

               
               473-631, - strand, RNAz p=0.99947

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-432, - strand, RNAz p=0.971704
               

               
               473-631, - strand, RNAz p=0.99947

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-736, gnl|bosTau2|chr12 (34438420-34439117)
               

               
               3-736, gnl|Hg17|chr10 (73421290-73417590)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-736, gnl|bosTau2|chr12 (34438420-34439117)
               

               
               3-736, gnl|Hg17|chr10 (73421290-73417590)

	314-432, - strand, RNAz p=0.971704
	473-631, - strand, RNAz p=0.99947

	3-736, gnl\|bosTau2\|chr12 (34438420-34439117)
	3-736, gnl\|Hg17\|chr10 (73421290-73417590)