Non-Coding RNA Search

Mixn-0022m14

Sequence:


               
               GAGAGTGTAGATCTCAGCTCCCCCTTCGCCCGCCCCGTCCTGGCTTCACCCAAGCACCAC
CGGGTTCCAGGCTGTGGGCGTGCTCAGTCTGCTCTGCAGCTTCCTCCCCTTGTCTCCTGA
CACAGGAGGATGCTGGGCTGGGGCGGGGGGACCAGCATTGAGCTACGGTTGCCTGGGGAC
CTACGCTTGGTGTGGAGAAGGCCAGCTAAGGAGAAGGCTTGCTGGGGGAGAAGGACAGCC
CTGGGGGCAGCTCTTGCGACCTTTTGCCACAGGCGCCCCGCACCATGACGGTCTCATATA
CCCTCAAAGTGGCAGAGGCCCGCTTCGGAAGCTTCTCTGGCCTGCTTCTCCGCTGGAGGG
GGAGCATCTACAAGCTCCTCTACAAGGAGTTCCTCCTCTTCGTCGCCCTGTATGCTCTGC
TCAGCATCACCTACCGGCTGCTGCTGACCCAAGAGCAAAGGCAAGTGTACGCTCAGGTGG
CCCGATACTGCAACCGCTCCGCAGACCTCATCCCCTTGTCCTTTGTCCTGGGTAAGTTCC
AAGGACAAGGGCTTCGCCCTGGCATCCTCTTAATCATCTTGCTTGACCTCCGGGTTGGGC
GGATGACTCGAGAGGGTCAGAATTACTCCAGTGGCACAGGCTGGAGGTCAGCGAGAGCAG
GCTGGGCAGGCCCGGGAGCTGCATGCAGGGTCCGGGATTTCCAGAGGATGAGGCCCTGCC
TGTCACTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGTGTAGATCTCAGCTCCCCCTTCGCCCGCCCCGTCCTGGCTTCACCCAAGCACCAC
CGGGTTCCAGGCTGTGGGCGTGCTCAGTCTGCTCTGCAGCTTCCTCCCCTTGTCTCCTGA
CACAGGAGGATGCTGGGCTGGGGCGGGGGGACCAGCATTGAGCTACGGTTGCCTGGGGAC
CTACGCTTGGTGTGGAGAAGGCCAGCTAAGGAGAAGGCTTGCTGGGGGAGAAGGACAGCC
CTGGGGGCAGCTCTTGCGACCTTTTGCCACAGGCGCCCCGCACCATGACGGTCTCATATA
CCCTCAAAGTGGCAGAGGCCCGCTTCGGAAGCTTCTCTGGCCTGCTTCTCCGCTGGAGGG
GGAGCATCTACAAGCTCCTCTACAAGGAGTTCCTCCTCTTCGTCGCCCTGTATGCTCTGC
TCAGCATCACCTACCGGCTGCTGCTGACCCAAGAGCAAAGGCAAGTGTACGCTCAGGTGG
CCCGATACTGCAACCGCTCCGCAGACCTCATCCCCTTGTCCTTTGTCCTGGGTAAGTTCC
AAGGACAAGGGCTTCGCCCTGGCATCCTCTTAATCATCTTGCTTGACCTCCGGGTTGGGC
GGATGACTCGAGAGGGTCAGAATTACTCCAGTGGCACAGGCTGGAGGTCAGCGAGAGCAG
GCTGGGCAGGCCCGGGAGCTGCATGCAGGGTCCGGGATTTCCAGAGGATGAGGCCCTGCC
TGTCACTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50751490|ref|XP_422424.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50751490|ref|XP_422424.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               260-437, - strand, RNAz p=0.933495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-437, - strand, RNAz p=0.933495

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-437, gnl|bosTau2|chr3 (68144725-68144296)
               

               
               1-437, gnl|Hg17|chr1 (44922708-44922318)
               

               
               1-437, gnl|Mm7|chr4 (116521276-116521846)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-437, gnl|bosTau2|chr3 (68144725-68144296)
               

               
               1-437, gnl|Hg17|chr1 (44922708-44922318)
               

               
               1-437, gnl|Mm7|chr4 (116521276-116521846)

	1-437, gnl\|bosTau2\|chr3 (68144725-68144296)
	1-437, gnl\|Hg17\|chr1 (44922708-44922318)
	1-437, gnl\|Mm7\|chr4 (116521276-116521846)