Non-Coding RNA Search

Mixn-0023i17

Sequence:


               
               GTTATATTTCTCTGAGGTCAGCCACTCGTGCTTTTTTGCCTATCAAGCTTCCTGAGAAGT
TAGATGTTGAAACAGTTATGAGTATTGATCATCTGAAACAGAAAATCCCTCCAGCACTGT
TTTATAAGGAAACATACTTAGGTCCAAATGAAGTTTTGAAGAATGGAATGTATTGCAGCC
TTTATGAAGTTGTAGAAAAGACAAGAATTGGAAGCAACATGGAAAGTTTGCTGCAAAAAC
TAGAGAAAGAAAAACTTGTTCTTGTTAAACCTTTGGGAGACCGAGGATACCTTTTTCTTC
TCTCTCCTTGTCAAATGGTTCCTCCATATGAACATCAAACTGCCAAGTCTCGAGTCTTAC
ATGCTTTGTTTTTGTTTCAAGAACCTAGAGGCATAGTTACTTCACAGAAAGGTTCTACCA
ATGCAACACCACAGGAGAGACATGAAAACATGCCAGATGTACTAAAAATAACTCAATTTT
TACAGTTTGCTTTGATTCAGTATCGAAAGGAATTCAAAAATATAAACACCATAAATTTTC
ATTCTGTTGTTGAAAAGTATGTAAGTGAATTTTTTAAGCGAGGTTTTGGTTCAGGTAAAC
GAGAGTTTATCATGTTTCCATATACTTCACGATTAGATGATAAAAAATTCTTATATTCAG
CTCCAAAAAATAAATCCCATATTGATAATTGTTTGCATACCTATATTTTTCGGCCCTGAA
TGTATCAGCTACCTATTTATAAGTTAAAAGAGTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATATTTCTCTGAGGTCAGCCACTCGTGCTTTTTTGCCTATCAAGCTTCCTGAGAAGT
TAGATGTTGAAACAGTTATGAGTATTGATCATCTGAAACAGAAAATCCCTCCAGCACTGT
TTTATAAGGAAACATACTTAGGTCCAAATGAAGTTTTGAAGAATGGAATGTATTGCAGCC
TTTATGAAGTTGTAGAAAAGACAAGAATTGGAAGCAACATGGAAAGTTTGCTGCAAAAAC
TAGAGAAAGAAAAACTTGTTCTTGTTAAACCTTTGGGAGACCGAGGATACCTTTTTCTTC
TCTCTCCTTGTCAAATGGTTCCTCCATATGAACATCAAACTGCCAAGTCTCGAGTCTTAC
ATGCTTTGTTTTTGTTTCAAGAACCTAGAGGCATAGTTACTTCACAGAAAGGTTCTACCA
ATGCAACACCACAGGAGAGACATGAAAACATGCCAGATGTACTAAAAATAACTCAATTTT
TACAGTTTGCTTTGATTCAGTATCGAAAGGAATTCAAAAATATAAACACCATAAATTTTC
ATTCTGTTGTTGAAAAGTATGTAAGTGAATTTTTTAAGCGAGGTTTTGGTTCAGGTAAAC
GAGAGTTTATCATGTTTCCATATACTTCACGATTAGATGATAAAAAATTCTTATATTCAG
CTCCAAAAAATAAATCCCATATTGATAATTGTTTGCATACCTATATTTTTCGGCCCTGAA
TGTATCAGCTACCTATTTATAAGTTAAAAGAGTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-259, + strand, RNAz p=0.59889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-259, + strand, RNAz p=0.59889

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC070096, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC070096, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               152-259, gnl|bosTau2|chr22 (32621454-32621347)
               

               
               152-259, gnl|Hg17|chr3 (56669904-56669797)
               

               
               152-259, gnl|Mm7|chr14 (24882711-24882818)
               


               
               397-757, gnl|bosTau2|chr22 (32609233-32608873)
               

               
               397-757, gnl|Hg17|chr3 (56656302-56655937)
               

               
               397-757, gnl|Mm7|chr14 (24893839-24894205)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-259, gnl|bosTau2|chr22 (32621454-32621347)
               

               
               152-259, gnl|Hg17|chr3 (56669904-56669797)
               

               
               152-259, gnl|Mm7|chr14 (24882711-24882818)
               


               
               397-757, gnl|bosTau2|chr22 (32609233-32608873)
               

               
               397-757, gnl|Hg17|chr3 (56656302-56655937)
               

               
               397-757, gnl|Mm7|chr14 (24893839-24894205)

	152-259, gnl\|bosTau2\|chr22 (32621454-32621347)
	152-259, gnl\|Hg17\|chr3 (56669904-56669797)
	152-259, gnl\|Mm7\|chr14 (24882711-24882818)

	397-757, gnl\|bosTau2\|chr22 (32609233-32608873)
	397-757, gnl\|Hg17\|chr3 (56656302-56655937)
	397-757, gnl\|Mm7\|chr14 (24893839-24894205)