Non-Coding RNA Search

Mixn-0024a12

Sequence:


               
               TAGGTATTGGGCGAGTGGCTGGCACAGCTTCCACTGCTGGCTGGTGAGGAGAGTGGAGAG
AAGGCTGGAGAGGTGTTCTCATAGCTGGAGCCCACAGACATGGCGCCGGGGCTGGTTGGA
GGGGACAGCAGGTAGCGGCCACCGTTGGCCATCGGTGACAGTGGGGAAGTTGCGGCAGGC
TTCTTGCCAGCAGCTCCAGGCTCCTCTAGCACCAGTGAGTCCATGATTTCCTGCAGGTCC
TTCTCAATAGAGCTCACCAGGGAACTGTGGCTGCCACAGGCTGAGGGTCCCCGGGTTGCA
GGCTGTGGAGTGTGGTTCCCATTCACCAGGCTTTCTGATTCTCCTGGGCCAGGACCAAAG
GGGGGGCCAGGGGCCCGGCCCCCTGCCGGAATCATGCTCTTCATCCACTTGGCTTCAGCC
GGGTGGTTAAAGCGGAGGAAGGTAGACTGACCCAGGCACAACATGCAGCCCTGGGTGAGC
CGGGTGGGCTGCCGGACGGGGAGCCCATCAATAGTGCAGGCATTGCCGCAGGGGTAGAGG
GTGAGGGTCCCCCGCAGGTTCTCGATGTAGCAATGCTCTGGAGCCAGGCCTGGACCCTGC
AGTGAGATGTCCCTGGCCGCAGAGCCAATCACTGTCCTCCCTTCCTCCAGCGGCAGAAGG
GTGATGGCCGTGCTGAGCCGCCCACTGCCCAGGCTCACCAGATGGGGCTTGTCCGTTTGC
ACTTTCAGCCCTTTGCCTGTTTNCATCAGGTCAAGGGTCCTTTCTGCACTGTAGCTTGGG
TCTTGCATCCAGGGNCCACCTGGCTCCTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTATTGGGCGAGTGGCTGGCACAGCTTCCACTGCTGGCTGGTGAGGAGAGTGGAGAG
AAGGCTGGAGAGGTGTTCTCATAGCTGGAGCCCACAGACATGGCGCCGGGGCTGGTTGGA
GGGGACAGCAGGTAGCGGCCACCGTTGGCCATCGGTGACAGTGGGGAAGTTGCGGCAGGC
TTCTTGCCAGCAGCTCCAGGCTCCTCTAGCACCAGTGAGTCCATGATTTCCTGCAGGTCC
TTCTCAATAGAGCTCACCAGGGAACTGTGGCTGCCACAGGCTGAGGGTCCCCGGGTTGCA
GGCTGTGGAGTGTGGTTCCCATTCACCAGGCTTTCTGATTCTCCTGGGCCAGGACCAAAG
GGGGGGCCAGGGGCCCGGCCCCCTGCCGGAATCATGCTCTTCATCCACTTGGCTTCAGCC
GGGTGGTTAAAGCGGAGGAAGGTAGACTGACCCAGGCACAACATGCAGCCCTGGGTGAGC
CGGGTGGGCTGCCGGACGGGGAGCCCATCAATAGTGCAGGCATTGCCGCAGGGGTAGAGG
GTGAGGGTCCCCCGCAGGTTCTCGATGTAGCAATGCTCTGGAGCCAGGCCTGGACCCTGC
AGTGAGATGTCCCTGGCCGCAGAGCCAATCACTGTCCTCCCTTCCTCCAGCGGCAGAAGG
GTGATGGCCGTGCTGAGCCGCCCACTGCCCAGGCTCACCAGATGGGGCTTGTCCGTTTGC
ACTTTCAGCCCTTTGCCTGTTTNCATCAGGTCAAGGGTCCTTTCTGCACTGTAGCTTGGG
TCTTGCATCCAGGGNCCACCTGGCTCCTATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51491166|emb|CAH18649.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51491166|emb|CAH18649.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               47-206, + strand, RNAz p=0.94051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-206, + strand, RNAz p=0.94051

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-342, gnl|bosTau2|chr15 (14933018-14933352)
               

               
               8-342, gnl|Hg17|chr11 (118003566-118003232)
               

               
               8-342, gnl|Mm7|chr9 (44650675-44651009)
               


               
               469-642, gnl|bosTau2|chr15 (14942770-14942943)
               

               
               469-642, gnl|Hg17|chr11 (117992137-117991964)
               

               
               469-642, gnl|Mm7|chr9 (44660354-44660527)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-342, gnl|bosTau2|chr15 (14933018-14933352)
               

               
               8-342, gnl|Hg17|chr11 (118003566-118003232)
               

               
               8-342, gnl|Mm7|chr9 (44650675-44651009)
               


               
               469-642, gnl|bosTau2|chr15 (14942770-14942943)
               

               
               469-642, gnl|Hg17|chr11 (117992137-117991964)
               

               
               469-642, gnl|Mm7|chr9 (44660354-44660527)

	8-342, gnl\|bosTau2\|chr15 (14933018-14933352)
	8-342, gnl\|Hg17\|chr11 (118003566-118003232)
	8-342, gnl\|Mm7\|chr9 (44650675-44651009)

	469-642, gnl\|bosTau2\|chr15 (14942770-14942943)
	469-642, gnl\|Hg17\|chr11 (117992137-117991964)
	469-642, gnl\|Mm7\|chr9 (44660354-44660527)