Non-Coding RNA Search

Mixn-0024k20

Sequence:


               
               GGCGCAGCAGTGATGGTTCTCCTCAAGGCCATGTCCCGGCTGCCCTGCAGAAAGTCAGGG
TACAGCGTAGAGCTGGTGAGTCCCTGAGAAGTTCAGCTGCCCCAAACCCCAAAGCCACAA
GAGCCGTAACTTGCTCCCTTCCCAAGGACCAGCTCAAAGTTGGGTTTACCCATTAACCTG
AGTGGGCCTTTCTCTCGAACACTGACCTCTCAATAGGTGTTTTTTGTTTTTTAATTTTTA
AGGGAGAGGCCTCCTTAGCTTAAATTGCCTTGAATCCCAAGAATGGGTGAAAGCGTTTTT
CATGGTTTATTTCCTTTTAATCATATGCTTGTTCCCATGTCTTCACCACCTGCTTTCCTT
CTCCAGAAGCTCTTTCGGGGTAAGTGCCCAGAGAATGGCCACAGCCCTGGCTCGCGCCTT
CCTGCGCGTTGTTGTCACCTAATCCTTCGCAGAGAGCCTCAGCCATTTCCTTTCTGTGCA
GCTGCGGTTCCACCCCCGGGAAAGGGGCACTTTGGTAACGAAGTGTCCACTGGGTTTTTC
GAGTGCTGACCCCAGCGTAGACAGTTCAGACCGCTAACTCACAGGTCAGCAACTCCTGAC
CCTGGTTTTGCAGCTTCCCTGGGGTATTTTTATGTATCTCATGGAAAGAGGCCATGGATG
CCCTCTGTGGGTCTCCAGCCTGCTTGTCCTGAAAGCATTCTGTAACCATTTCTGCTCCAG
AAGGCTGGGACTCTCCCTTGGAAAATTTATATTTCGGCAGCATTTGCATGTACACACGCT
AC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCAGCAGTGATGGTTCTCCTCAAGGCCATGTCCCGGCTGCCCTGCAGAAAGTCAGGG
TACAGCGTAGAGCTGGTGAGTCCCTGAGAAGTTCAGCTGCCCCAAACCCCAAAGCCACAA
GAGCCGTAACTTGCTCCCTTCCCAAGGACCAGCTCAAAGTTGGGTTTACCCATTAACCTG
AGTGGGCCTTTCTCTCGAACACTGACCTCTCAATAGGTGTTTTTTGTTTTTTAATTTTTA
AGGGAGAGGCCTCCTTAGCTTAAATTGCCTTGAATCCCAAGAATGGGTGAAAGCGTTTTT
CATGGTTTATTTCCTTTTAATCATATGCTTGTTCCCATGTCTTCACCACCTGCTTTCCTT
CTCCAGAAGCTCTTTCGGGGTAAGTGCCCAGAGAATGGCCACAGCCCTGGCTCGCGCCTT
CCTGCGCGTTGTTGTCACCTAATCCTTCGCAGAGAGCCTCAGCCATTTCCTTTCTGTGCA
GCTGCGGTTCCACCCCCGGGAAAGGGGCACTTTGGTAACGAAGTGTCCACTGGGTTTTTC
GAGTGCTGACCCCAGCGTAGACAGTTCAGACCGCTAACTCACAGGTCAGCAACTCCTGAC
CCTGGTTTTGCAGCTTCCCTGGGGTATTTTTATGTATCTCATGGAAAGAGGCCATGGATG
CCCTCTGTGGGTCTCCAGCCTGCTTGTCCTGAAAGCATTCTGTAACCATTTCTGCTCCAG
AAGGCTGGGACTCTCCCTTGGAAAATTTATATTTCGGCAGCATTTGCATGTACACACGCT
AC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               372-476, - strand, RNAz p=0.81244
               

               
               515-627, - strand, RNAz p=0.543375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-476, - strand, RNAz p=0.81244
               

               
               515-627, - strand, RNAz p=0.543375

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-749, gnl|bosTau2|chr19 (3536445-3537189)
               

               
               9-749, gnl|Hg17|chr17 (52539638-52540573)
               

               
               9-749, gnl|Mm7|chr11 (88953194-88952483)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-749, gnl|bosTau2|chr19 (3536445-3537189)
               

               
               9-749, gnl|Hg17|chr17 (52539638-52540573)
               

               
               9-749, gnl|Mm7|chr11 (88953194-88952483)

	372-476, - strand, RNAz p=0.81244
	515-627, - strand, RNAz p=0.543375

	9-749, gnl\|bosTau2\|chr19 (3536445-3537189)
	9-749, gnl\|Hg17\|chr17 (52539638-52540573)
	9-749, gnl\|Mm7\|chr11 (88953194-88952483)