Non-Coding RNA Search

Mixn-0025b06

Sequence:


               
               CGCAGCACCTCCCAGGAGCTCCCCCAGCAGCAGCCGCCGGGACCCGACTCTCATCTCCTT
TACCGGCCGCTCTCCAGCCTGTCCTCTCCTAAGTCTCCATCGGGCACCGACCTCGCCCTG
CCCCGCCGGACGCCACAGCAGCAGCCCCAGCAGCGCCAGGACAAAATGGGAGAGTGAGGC
TATCCCTCGGGGACCAGCTCTTGGCCGGCGCGGGTCGGTGCGTCGGGCCGGGCCAAGTGG
TGCCGGGGATGCAGGGCTAGACCGCCTCCAGCGCCTCAGAACGGAGCGGGCCCGGCCTGG
GGCCCAGGCGGCGGCGGCGGCGGCAGCTGGCACGGCTCCGCACCCGCCCTTCGCTTTCGC
CTTTCCTCCTCTCCCTCCCCTGCTGCCCGGAGGAGTCTCCACCCTGCTTCTCTTTCTCTA
CCCCCTCCTGCCCATCTCGGGACCGGGAACTCTCCATGGCCAAGGCGGCCGGGGCCCGCT
AGGCTGAAGCATTTGCCTGGAGCGACAAGTCTGGTGGCGACGGCGCTGTCGGCTGTCGTG
AGGGGCTGCCGGGTGGGATGCTACTTTGGGCATCCGAGCGGCTGTGGGTCGCCGTCGCCC
CCGGCCCGGGGTCTGGAGAGCGGAGATCCCCTTAGTGAGGGGGAGGAGGGGGACCGCGCG
CACCTGGTGACCCTGGAGTTCCGGCTCCTCCNGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCACCTCCCAGGAGCTCCCCCAGCAGCAGCCGCCGGGACCCGACTCTCATCTCCTT
TACCGGCCGCTCTCCAGCCTGTCCTCTCCTAAGTCTCCATCGGGCACCGACCTCGCCCTG
CCCCGCCGGACGCCACAGCAGCAGCCCCAGCAGCGCCAGGACAAAATGGGAGAGTGAGGC
TATCCCTCGGGGACCAGCTCTTGGCCGGCGCGGGTCGGTGCGTCGGGCCGGGCCAAGTGG
TGCCGGGGATGCAGGGCTAGACCGCCTCCAGCGCCTCAGAACGGAGCGGGCCCGGCCTGG
GGCCCAGGCGGCGGCGGCGGCGGCAGCTGGCACGGCTCCGCACCCGCCCTTCGCTTTCGC
CTTTCCTCCTCTCCCTCCCCTGCTGCCCGGAGGAGTCTCCACCCTGCTTCTCTTTCTCTA
CCCCCTCCTGCCCATCTCGGGACCGGGAACTCTCCATGGCCAAGGCGGCCGGGGCCCGCT
AGGCTGAAGCATTTGCCTGGAGCGACAAGTCTGGTGGCGACGGCGCTGTCGGCTGTCGTG
AGGGGCTGCCGGGTGGGATGCTACTTTGGGCATCCGAGCGGCTGTGGGTCGCCGTCGCCC
CCGGCCCGGGGTCTGGAGAGCGGAGATCCCCTTAGTGAGGGGGAGGAGGGGGACCGCGCG
CACCTGGTGACCCTGGAGTTCCGGCTCCTCCNGCCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               78-196, - strand, RNAz p=0.721279
               

               
               350-466, - strand, RNAz p=0.927986

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-196, - strand, RNAz p=0.721279
               

               
               350-466, - strand, RNAz p=0.927986

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-691, gnl|bosTau2|chr24 (25354195-25354873)
               

               
               1-691, gnl|canFam2|chr7 (69904584-69904084)
               

               
               1-691, gnl|echTel1|scaffold_288256 (720-1233)
               

               
               1-691, gnl|hg17|chr18 (16944886-16945383)
               

               
               1-691, gnl|Hg17|chr18 (16945650-16944964)
               

               
               1-691, gnl|mm7|chr18 (10387885-10388387)
               

               
               1-691, gnl|Mm7|chr18 (10388647-10387957)
               

               
               1-691, gnl|monDom2|scaffold_21 (35666620-35667068)
               

               
               1-691, gnl|panTro1|chr17 (12847471-12847968)
               

               
               1-691, gnl|rheMac2|chr18 (14103287-14103784)
               

               
               1-691, gnl|rn3|chr18 (1511775-1512259)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-691, gnl|bosTau2|chr24 (25354195-25354873)
               

               
               1-691, gnl|canFam2|chr7 (69904584-69904084)
               

               
               1-691, gnl|echTel1|scaffold_288256 (720-1233)
               

               
               1-691, gnl|hg17|chr18 (16944886-16945383)
               

               
               1-691, gnl|Hg17|chr18 (16945650-16944964)
               

               
               1-691, gnl|mm7|chr18 (10387885-10388387)
               

               
               1-691, gnl|Mm7|chr18 (10388647-10387957)
               

               
               1-691, gnl|monDom2|scaffold_21 (35666620-35667068)
               

               
               1-691, gnl|panTro1|chr17 (12847471-12847968)
               

               
               1-691, gnl|rheMac2|chr18 (14103287-14103784)
               

               
               1-691, gnl|rn3|chr18 (1511775-1512259)

	78-196, - strand, RNAz p=0.721279
	350-466, - strand, RNAz p=0.927986

	1-691, gnl\|bosTau2\|chr24 (25354195-25354873)
	1-691, gnl\|canFam2\|chr7 (69904584-69904084)
	1-691, gnl\|echTel1\|scaffold_288256 (720-1233)
	1-691, gnl\|hg17\|chr18 (16944886-16945383)
	1-691, gnl\|Hg17\|chr18 (16945650-16944964)
	1-691, gnl\|mm7\|chr18 (10387885-10388387)
	1-691, gnl\|Mm7\|chr18 (10388647-10387957)
	1-691, gnl\|monDom2\|scaffold_21 (35666620-35667068)
	1-691, gnl\|panTro1\|chr17 (12847471-12847968)
	1-691, gnl\|rheMac2\|chr18 (14103287-14103784)
	1-691, gnl\|rn3\|chr18 (1511775-1512259)