Non-Coding RNA Search

Mixn-0025b09

Sequence:


               
               GGAAAGGAAGAAAAAGAAAGACAGAAAGAAAAAGAAAGAGAGAAAGAAAGAAAAGAAAGG
AAAGAAAGAAAGGAGATAGAAAGGGAGAGGGAAAAAGTCAGTCTGTGTACAGGAGCAGCC
AGCAGGCAGTTTCTCTAGTTCTTTGGCAGATGCGATGCAGTATCTTTTCCAGGAAGGTAC
GAAAGTTTGGTTGTTTTCACGTGTATTCAGCTCACCCTTTTAGGAGCACATCAGTTTGCT
TCGTTTGGTATTTGATACTCCCCAGCCTTGTCCTCAGGCCTGATTTGATTTGCCAGGGTC
CTGACACCAACTCTCAGGCCAAGTTCTAAATTCAGGTGTGGGCTCACAGTGCTATTGAGC
TTGTCAAATTCTGGCCTCCCCTGAACATGAGCCCCACTGGAGCCTGGGGTGTTTGAAAAG
GGTGTGATCACTCTAGGGCTGAAATTAAAGGCTTCTTTCTTTTCCTGATGAAGCCAGGCT
GCTTCTCCAGAGCACACCCTCCCGAGCAGGGAGCACAAGCACTAGCTGAAAGCAGGGATT
GTTTCAAGGAAGCCCATCGACCCCCGTAGGAAGGCAGCCTGGTCACTTGAACACCACAGC
TGAGGCTGCTTCTCTNCATTTACTCATTTTGCAAAGCAGTGACCTCTGCTTACTCATTAG
GGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGGAAGAAAAAGAAAGACAGAAAGAAAAAGAAAGAGAGAAAGAAAGAAAAGAAAGG
AAAGAAAGAAAGGAGATAGAAAGGGAGAGGGAAAAAGTCAGTCTGTGTACAGGAGCAGCC
AGCAGGCAGTTTCTCTAGTTCTTTGGCAGATGCGATGCAGTATCTTTTCCAGGAAGGTAC
GAAAGTTTGGTTGTTTTCACGTGTATTCAGCTCACCCTTTTAGGAGCACATCAGTTTGCT
TCGTTTGGTATTTGATACTCCCCAGCCTTGTCCTCAGGCCTGATTTGATTTGCCAGGGTC
CTGACACCAACTCTCAGGCCAAGTTCTAAATTCAGGTGTGGGCTCACAGTGCTATTGAGC
TTGTCAAATTCTGGCCTCCCCTGAACATGAGCCCCACTGGAGCCTGGGGTGTTTGAAAAG
GGTGTGATCACTCTAGGGCTGAAATTAAAGGCTTCTTTCTTTTCCTGATGAAGCCAGGCT
GCTTCTCCAGAGCACACCCTCCCGAGCAGGGAGCACAAGCACTAGCTGAAAGCAGGGATT
GTTTCAAGGAAGCCCATCGACCCCCGTAGGAAGGCAGCCTGGTCACTTGAACACCACAGC
TGAGGCTGCTTCTCTNCATTTACTCATTTTGCAAAGCAGTGACCTCTGCTTACTCATTAG
GGAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-155, - strand, RNAz p=0.935055
               

               
               276-395, - strand, RNAz p=0.902324

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-155, - strand, RNAz p=0.935055
               

               
               276-395, - strand, RNAz p=0.902324

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-672, gnl|bosTau2|chr15 (24197085-24197754)
               

               
               2-672, gnl|Hg17|chr11 (15947203-15946541)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-672, gnl|bosTau2|chr15 (24197085-24197754)
               

               
               2-672, gnl|Hg17|chr11 (15947203-15946541)

	39-155, - strand, RNAz p=0.935055
	276-395, - strand, RNAz p=0.902324

	2-672, gnl\|bosTau2\|chr15 (24197085-24197754)
	2-672, gnl\|Hg17\|chr11 (15947203-15946541)