Non-Coding RNA Search

Mixn-0025d01

Sequence:


               
               CAGGCCGCCGGTGGAGCTCAGCCCCCTGACCATCACACCCAAGGGCATGGCCCTCGACCA
GTTCCCAAGGAAGGTGGGCATAGTGGGCTACGGCCGCCTCGGGCAGTCCCTTGTCTCCCA
CTTGCTGACTCAGGGACCAGAACTGGGCCTCGAACTCGTTTTCGTCTGGAACCGTGACCC
AGGACGAATGGCGGGGAGCGTACCCCCTTCCTTGCAGCTCCAGAACCTTGCTGCTCTCGG
GGAGAGGCACCCTGACCTTGTGGTGGAAGTGGCCCATCCCAAAATAATCCACGAATCTGG
GGCAGAGATCCTGCGCTATGCCCATCTCCTGGTGGGCTCCCCCTCGGCCCTGGCTGAGCA
GGCCACGGAGCAGCGGCTCCTGGAGGCCTCGCATCGCTGGGGCCACGCTGTGTTCGTGGC
CCGAGGTGCCCTGTGGGGCACTGACGACATCACCAGATTGGACAAAGCCGGAGGCCTCCA
GAGCCTCCGAGTCACCATGGCCACACACCCCGATGGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCGCCGGTGGAGCTCAGCCCCCTGACCATCACACCCAAGGGCATGGCCCTCGACCA
GTTCCCAAGGAAGGTGGGCATAGTGGGCTACGGCCGCCTCGGGCAGTCCCTTGTCTCCCA
CTTGCTGACTCAGGGACCAGAACTGGGCCTCGAACTCGTTTTCGTCTGGAACCGTGACCC
AGGACGAATGGCGGGGAGCGTACCCCCTTCCTTGCAGCTCCAGAACCTTGCTGCTCTCGG
GGAGAGGCACCCTGACCTTGTGGTGGAAGTGGCCCATCCCAAAATAATCCACGAATCTGG
GGCAGAGATCCTGCGCTATGCCCATCTCCTGGTGGGCTCCCCCTCGGCCCTGGCTGAGCA
GGCCACGGAGCAGCGGCTCCTGGAGGCCTCGCATCGCTGGGGCCACGCTGTGTTCGTGGC
CCGAGGTGCCCTGTGGGGCACTGACGACATCACCAGATTGGACAAAGCCGGAGGCCTCCA
GAGCCTCCGAGTCACCATGGCCACACACCCCGATGGCTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21312002|ref|NP_080966.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21312002|ref|NP_080966.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               364-481, + strand, RNAz p=0.98135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-481, + strand, RNAz p=0.98135

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               101-258, gnl|bosTau2|chr18 (49317917-49317761)
               

               
               101-258, gnl|Hg17|chr19 (55708486-55708330)
               

               
               101-258, gnl|Mm7|chr7 (40642013-40642169)
               


               
               328-481, gnl|bosTau2|chr18 (49317348-49317195)
               

               
               328-481, gnl|Hg17|chr19 (55707883-55707730)
               

               
               328-481, gnl|Mm7|chr7 (40642584-40642737)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-258, gnl|bosTau2|chr18 (49317917-49317761)
               

               
               101-258, gnl|Hg17|chr19 (55708486-55708330)
               

               
               101-258, gnl|Mm7|chr7 (40642013-40642169)
               


               
               328-481, gnl|bosTau2|chr18 (49317348-49317195)
               

               
               328-481, gnl|Hg17|chr19 (55707883-55707730)
               

               
               328-481, gnl|Mm7|chr7 (40642584-40642737)

	101-258, gnl\|bosTau2\|chr18 (49317917-49317761)
	101-258, gnl\|Hg17\|chr19 (55708486-55708330)
	101-258, gnl\|Mm7\|chr7 (40642013-40642169)

	328-481, gnl\|bosTau2\|chr18 (49317348-49317195)
	328-481, gnl\|Hg17\|chr19 (55707883-55707730)
	328-481, gnl\|Mm7\|chr7 (40642584-40642737)