Non-Coding RNA Search

Mixn-0025i23

Sequence:


               
               GTCTCCTGGATCCCAGACCCACTGTGTGGCTGCAGGAGAGCTCCCCAACCTCTTGGGTCC
TTGGCCTTCCCAGGACACCCAGCAAGTAAGGAGTGGGCAAGGGACTCAGGCACCCTGGGA
AGCCAGACAAGAAACCATCTGAGTGGGAGCCATGGGCACGCCAGCTATTTTAAGCTTCCA
AAGAACAACAACACAAATTTGTCACCGAGGTGAGCAGCAGAATCGTTGAGCATATTGGGG
CATTAGTTCCAGACATTAATTAAGCAGCGGTTTTTTTGAGCAGTGAATTTATCCTTCGCA
GAGTTCAGAGGGTTGGGGTGGGGGCAGGAAGCAAGGCCCAGGGAGAAAGCGGAGAGCTAG
GAACCCCAGGATCCCAGATCTGGGAGGCGCGGGCCCTCACAGAGCTGGGCACAATGTCCT
GGACCTAAGGTGACCAGGCGAGCCACCACCCCAAACCTCCCAAAGCCAGCTGGACCCCAA
CTTCAAACAGACTACCTGCCTAGTACATGCAATGCACATGCTCAGCTCACACGAACACAT
GGCACAAGTGCCAGGCCTCGGCCCCTCCCCGCATGGCACATGCTGCCACACAACCAACCT
GCCTGGCTAGCCTCCCAGAAAGGCCTCCTCCAGGACCCAGCATGGCAGCCCTTGGCCCCG
AAGCTCCAGCTGAAGGTGATATCTGGCTGGGGCTAGGGAAGGNTGTCACCCAGTGACTTC
TCTGCCCCAGGGACAGNTCAATTACTCTCCCCTTGGGGAAGGGGACACCACGATGGGCAT
TGCACTTCAAAAGCCTACTTTCAGCTGCAGGCTGAAGCTGTCACTCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCTGGATCCCAGACCCACTGTGTGGCTGCAGGAGAGCTCCCCAACCTCTTGGGTCC
TTGGCCTTCCCAGGACACCCAGCAAGTAAGGAGTGGGCAAGGGACTCAGGCACCCTGGGA
AGCCAGACAAGAAACCATCTGAGTGGGAGCCATGGGCACGCCAGCTATTTTAAGCTTCCA
AAGAACAACAACACAAATTTGTCACCGAGGTGAGCAGCAGAATCGTTGAGCATATTGGGG
CATTAGTTCCAGACATTAATTAAGCAGCGGTTTTTTTGAGCAGTGAATTTATCCTTCGCA
GAGTTCAGAGGGTTGGGGTGGGGGCAGGAAGCAAGGCCCAGGGAGAAAGCGGAGAGCTAG
GAACCCCAGGATCCCAGATCTGGGAGGCGCGGGCCCTCACAGAGCTGGGCACAATGTCCT
GGACCTAAGGTGACCAGGCGAGCCACCACCCCAAACCTCCCAAAGCCAGCTGGACCCCAA
CTTCAAACAGACTACCTGCCTAGTACATGCAATGCACATGCTCAGCTCACACGAACACAT
GGCACAAGTGCCAGGCCTCGGCCCCTCCCCGCATGGCACATGCTGCCACACAACCAACCT
GCCTGGCTAGCCTCCCAGAAAGGCCTCCTCCAGGACCCAGCATGGCAGCCCTTGGCCCCG
AAGCTCCAGCTGAAGGTGATATCTGGCTGGGGCTAGGGAAGGNTGTCACCCAGTGACTTC
TCTGCCCCAGGGACAGNTCAATTACTCTCCCCTTGGGGAAGGGGACACCACGATGGGCAT
TGCACTTCAAAAGCCTACTTTCAGCTGCAGGCTGAAGCTGTCACTCCGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               37-155, - strand, RNAz p=0.831935
               

               
               313-460, - strand, RNAz p=0.843398
               

               
               540-659, - strand, RNAz p=0.745592

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-155, - strand, RNAz p=0.831935
               

               
               313-460, - strand, RNAz p=0.843398
               

               
               540-659, - strand, RNAz p=0.745592

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               38-173, - strand, RNAmicro p=0.99828

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               38-173, - strand, RNAmicro p=0.99828

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-826, gnl|bosTau2|chr19 (33404163-33403349)
               

               
               1-826, gnl|Hg17|chr17 (33974217-33974988)
               

               
               1-826, gnl|Mm7|chr11 (97646463-97647261)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr19 (33404163-33403349)
               

               
               1-826, gnl|Hg17|chr17 (33974217-33974988)
               

               
               1-826, gnl|Mm7|chr11 (97646463-97647261)

	37-155, - strand, RNAz p=0.831935
	313-460, - strand, RNAz p=0.843398
	540-659, - strand, RNAz p=0.745592

	1-826, gnl\|bosTau2\|chr19 (33404163-33403349)
	1-826, gnl\|Hg17\|chr17 (33974217-33974988)
	1-826, gnl\|Mm7\|chr11 (97646463-97647261)