Non-Coding RNA Search

Mixn-0025n16

Sequence:


               
               GCTCGTCAGCAGCTGGTTAAGACTAGCTGCTGATGAATCGTTAGGAATGGAGCGGAGATT
GCCAAACTCATTCCATCTATTTTCTTTTTAATAGAAAGCATTTCTGACCGGTGTGGTTGG
GGAGTCCAGCGGGAATCCAAGAAGTGAAAGGTCACCGATTAATTTATGGTCCTCAACCAA
GGGGGAGCACGAGGTTGGGGGCAAGAGGGGGAGAAAGGGAAAGGAAAAAAGACTCCCCCC
CACCTCCTTTCTCGGTTGTAGCTGCAGGATCAGTCCTTTCCTTGGATCTTTAGGAATTAT
GAAAAATGAATCATGAGAAATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGTCAGCAGCTGGTTAAGACTAGCTGCTGATGAATCGTTAGGAATGGAGCGGAGATT
GCCAAACTCATTCCATCTATTTTCTTTTTAATAGAAAGCATTTCTGACCGGTGTGGTTGG
GGAGTCCAGCGGGAATCCAAGAAGTGAAAGGTCACCGATTAATTTATGGTCCTCAACCAA
GGGGGAGCACGAGGTTGGGGGCAAGAGGGGGAGAAAGGGAAAGGAAAAAAGACTCCCCCC
CACCTCCTTTCTCGGTTGTAGCTGCAGGATCAGTCCTTTCCTTGGATCTTTAGGAATTAT
GAAAAATGAATCATGAGAAATAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-92, - strand, RNAz p=0.996449
               

               
               158-302, - strand, RNAz p=0.663468

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-92, - strand, RNAz p=0.996449
               

               
               158-302, - strand, RNAz p=0.663468

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-329, gnl|bosTau2|chr18 (33577650-33577321)
               

               
               1-329, gnl|canFam2|chr5 (81475870-81476281)
               

               
               1-329, gnl|dasNov1|scaffold_947 (19332-19744)
               

               
               1-329, gnl|echTel1|scaffold_294183 (10619-11003)
               

               
               1-329, gnl|galGal2|chr11_random (748591-748225)
               

               
               1-329, gnl|hg17|chr16 (71393060-71393467)
               

               
               1-329, gnl|Hg17|chr16 (71393100-71393429)
               

               
               1-329, gnl|loxAfr1|scaffold_17395 (2831-2418)
               

               
               1-329, gnl|mm7|chr8 (107543534-107543113)
               

               
               1-329, gnl|Mm7|chr8 (107543494-107543149)
               

               
               1-329, gnl|monDom2|scaffold_23 (2438193-2438620)
               

               
               1-329, gnl|panTro1|chr18 (65756561-65756968)
               

               
               1-329, gnl|rheMac2|chr20 (69853356-69852951)
               

               
               1-329, gnl|rn3|chr19 (38774212-38773812)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr18 (33577650-33577321)
               

               
               1-329, gnl|canFam2|chr5 (81475870-81476281)
               

               
               1-329, gnl|dasNov1|scaffold_947 (19332-19744)
               

               
               1-329, gnl|echTel1|scaffold_294183 (10619-11003)
               

               
               1-329, gnl|galGal2|chr11_random (748591-748225)
               

               
               1-329, gnl|hg17|chr16 (71393060-71393467)
               

               
               1-329, gnl|Hg17|chr16 (71393100-71393429)
               

               
               1-329, gnl|loxAfr1|scaffold_17395 (2831-2418)
               

               
               1-329, gnl|mm7|chr8 (107543534-107543113)
               

               
               1-329, gnl|Mm7|chr8 (107543494-107543149)
               

               
               1-329, gnl|monDom2|scaffold_23 (2438193-2438620)
               

               
               1-329, gnl|panTro1|chr18 (65756561-65756968)
               

               
               1-329, gnl|rheMac2|chr20 (69853356-69852951)
               

               
               1-329, gnl|rn3|chr19 (38774212-38773812)

	1-92, - strand, RNAz p=0.996449
	158-302, - strand, RNAz p=0.663468

	1-329, gnl\|bosTau2\|chr18 (33577650-33577321)
	1-329, gnl\|canFam2\|chr5 (81475870-81476281)
	1-329, gnl\|dasNov1\|scaffold_947 (19332-19744)
	1-329, gnl\|echTel1\|scaffold_294183 (10619-11003)
	1-329, gnl\|galGal2\|chr11_random (748591-748225)
	1-329, gnl\|hg17\|chr16 (71393060-71393467)
	1-329, gnl\|Hg17\|chr16 (71393100-71393429)
	1-329, gnl\|loxAfr1\|scaffold_17395 (2831-2418)
	1-329, gnl\|mm7\|chr8 (107543534-107543113)
	1-329, gnl\|Mm7\|chr8 (107543494-107543149)
	1-329, gnl\|monDom2\|scaffold_23 (2438193-2438620)
	1-329, gnl\|panTro1\|chr18 (65756561-65756968)
	1-329, gnl\|rheMac2\|chr20 (69853356-69852951)
	1-329, gnl\|rn3\|chr19 (38774212-38773812)