Non-Coding RNA Search

Mixn-0025p21

Sequence:


               
               TTTATCAGCCAGCACAGATTACTTAAAGCGTACCATTTCTCCGCGATCCAATTTTATTAG
GATTTACTCTCATTTGTGCTCGGCTTCTCTGGGGAAATAATGCTTTGATTAATGTAATCC
TGGCCCGGGATCCGCCACATGCCCCTCGCCCCTCTCCCAAGAGAAAGGGCCTGTTTGACA
AACAATAACAGAGCAGCAACTCTAGCAATCTACCCACACCTTTGGGGATGGCTAGGGAGT
GGGTGGCACACGCTCACACACTGTTCGCTAAGTGCACGGGTGAGAGGAGGCAGCGGACTC
TGCAAGGGGCGAACTTTCCAGACGCAAAACCCTGGGCTCCGAGGCGCGGGGGCTCTAGCG
GAGGGTCCCCAGTGGGGTGCTTGCTCTGGGTGCCCGTGTGCGCCTGCCCTCTGCTCGCTC
CTGCTGTCTGCCTCTTTGTCCCCCGCCACAGGCCTAGGCCACGGAGATCTGCGCGCTCCC
CGTGGGCAGCCCCAGGACCCAGGGCGCGTCCACAGCGCCCACGCGCGGCCCCACAGCACC
TCGAGAGCCAATTTTAGGGGGCGAACCTGGCACCGACCCGAGGCGCCCCACAGCCGCCAA
AATCTAGGCAGAAACCAGAAACGTGNGGTCACAGCCAGTGGCTCTCCTGCGGCACCAATG
CGTGCACCCATCCAGCCCCGCACACACGCACACAATGGAGATCCGCCGGGAGCCGCGCTC
GCCCCTGCTGCGGGCTGAGAGCTGCGCCCCCTTTCCGCCCCCCCTCTCCGNGNNAGCGGG
GCCCCGCCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATCAGCCAGCACAGATTACTTAAAGCGTACCATTTCTCCGCGATCCAATTTTATTAG
GATTTACTCTCATTTGTGCTCGGCTTCTCTGGGGAAATAATGCTTTGATTAATGTAATCC
TGGCCCGGGATCCGCCACATGCCCCTCGCCCCTCTCCCAAGAGAAAGGGCCTGTTTGACA
AACAATAACAGAGCAGCAACTCTAGCAATCTACCCACACCTTTGGGGATGGCTAGGGAGT
GGGTGGCACACGCTCACACACTGTTCGCTAAGTGCACGGGTGAGAGGAGGCAGCGGACTC
TGCAAGGGGCGAACTTTCCAGACGCAAAACCCTGGGCTCCGAGGCGCGGGGGCTCTAGCG
GAGGGTCCCCAGTGGGGTGCTTGCTCTGGGTGCCCGTGTGCGCCTGCCCTCTGCTCGCTC
CTGCTGTCTGCCTCTTTGTCCCCCGCCACAGGCCTAGGCCACGGAGATCTGCGCGCTCCC
CGTGGGCAGCCCCAGGACCCAGGGCGCGTCCACAGCGCCCACGCGCGGCCCCACAGCACC
TCGAGAGCCAATTTTAGGGGGCGAACCTGGCACCGACCCGAGGCGCCCCACAGCCGCCAA
AATCTAGGCAGAAACCAGAAACGTGNGGTCACAGCCAGTGGCTCTCCTGCGGCACCAATG
CGTGCACCCATCCAGCCCCGCACACACGCACACAATGGAGATCCGCCGGGAGCCGCGCTC
GCCCCTGCTGCGGGCTGAGAGCTGCGCCCCCTTTCCGCCCCCCCTCTCCGNGNNAGCGGG
GCCCCGCCCCGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               420-535, - strand, RNAz p=0.758307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-535, - strand, RNAz p=0.758307

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               357-460, + strand, RNAmicro p=0.978282

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               357-460, + strand, RNAmicro p=0.978282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-793, gnl|bosTau2|chr11 (6539418-6540197)
               

               
               2-793, gnl|Hg17|chr2 (104919206-104920017)
               

               
               2-793, gnl|Mm7|chr1 (42926268-42927095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-793, gnl|bosTau2|chr11 (6539418-6540197)
               

               
               2-793, gnl|Hg17|chr2 (104919206-104920017)
               

               
               2-793, gnl|Mm7|chr1 (42926268-42927095)

	2-793, gnl\|bosTau2\|chr11 (6539418-6540197)
	2-793, gnl\|Hg17\|chr2 (104919206-104920017)
	2-793, gnl\|Mm7\|chr1 (42926268-42927095)