Non-Coding RNA Search

Mixn-0027d15

Sequence:


               
               GTGTGCTAAAAAGTGTCTTTTGGGCTTGTCTGAGGAACTACCCATCATATAACAGAGCAG
GTTTATAGTCCTGCTCCAATTAGAAAATGCATTTCAAGTTCTAGATTGCCACCATTTGGG
GTATGTTTCATTTGGATGTGGAAACTCAGTGTTTGTTGTTTGTATATTGTTGGTGTATAA
AATACTTTAAAATATGTTCTCTTAGTTAAGAAATCTTACAATGATGTTCATCCTATTAAT
CACATTTTTGATTATTTAGTAAACATTTAGTATCAATACCCCCCAGACCCTCAGCCTTCT
TGTTTAAATCTGCTATATTATGGCCTGTTTCCTTGGGTAGCATTTATGCTACAGATTTTC
AGAACTAATCAAAACTGGCCTATATGTGGCAGGACAATCGGGGAGGTACTTCAGGGGTAA
ACATTTCTTTACATTTCAGGTAACACTATCCAGGCAGCCATTTACAGAGAAAGGCCGGCT
GTTGTGCTCAATGTAGGCGATGTTGACAATTTTTTATTGTATACATGGATAAGTCTTTTA
TCTGGATTGAGTATGTGATGTATTGTAGGAAAAAAATAAAACATGTTGAGCATTTTAAAA
AAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGCTAAAAAGTGTCTTTTGGGCTTGTCTGAGGAACTACCCATCATATAACAGAGCAG
GTTTATAGTCCTGCTCCAATTAGAAAATGCATTTCAAGTTCTAGATTGCCACCATTTGGG
GTATGTTTCATTTGGATGTGGAAACTCAGTGTTTGTTGTTTGTATATTGTTGGTGTATAA
AATACTTTAAAATATGTTCTCTTAGTTAAGAAATCTTACAATGATGTTCATCCTATTAAT
CACATTTTTGATTATTTAGTAAACATTTAGTATCAATACCCCCCAGACCCTCAGCCTTCT
TGTTTAAATCTGCTATATTATGGCCTGTTTCCTTGGGTAGCATTTATGCTACAGATTTTC
AGAACTAATCAAAACTGGCCTATATGTGGCAGGACAATCGGGGAGGTACTTCAGGGGTAA
ACATTTCTTTACATTTCAGGTAACACTATCCAGGCAGCCATTTACAGAGAAAGGCCGGCT
GTTGTGCTCAATGTAGGCGATGTTGACAATTTTTTATTGTATACATGGATAAGTCTTTTA
TCTGGATTGAGTATGTGATGTATTGTAGGAAAAAAATAAAACATGTTGAGCATTTTAAAA
AAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-132, - strand, RNAz p=0.997289
               

               
               429-545, - strand, RNAz p=0.840601

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-132, - strand, RNAz p=0.997289
               

               
               429-545, - strand, RNAz p=0.840601

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-596, gnl|bosTau2|chrX (2918490-2919087)
               

               
               1-596, gnl|canFam2|chrX (100468163-100468549)
               

               
               1-596, gnl|hg17|chrX (125023011-125023378)
               

               
               1-596, gnl|Hg17|chrX (125023604-125023022)
               

               
               1-596, gnl|loxAfr1|scaffold_33791 (18281-17906)
               

               
               1-596, gnl|mm7|chrX (39457728-39458105)
               

               
               1-596, gnl|Mm7|chrX (39458321-39457734)
               

               
               1-596, gnl|oryCun1|scaffold_200331 (4738-4329)
               

               
               1-596, gnl|panTro1|chrX (129199129-129199499)
               

               
               1-596, gnl|rheMac2|chrX (124385293-124385663)
               

               
               1-596, gnl|rn3|chrX (604018-603659)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chrX (2918490-2919087)
               

               
               1-596, gnl|canFam2|chrX (100468163-100468549)
               

               
               1-596, gnl|hg17|chrX (125023011-125023378)
               

               
               1-596, gnl|Hg17|chrX (125023604-125023022)
               

               
               1-596, gnl|loxAfr1|scaffold_33791 (18281-17906)
               

               
               1-596, gnl|mm7|chrX (39457728-39458105)
               

               
               1-596, gnl|Mm7|chrX (39458321-39457734)
               

               
               1-596, gnl|oryCun1|scaffold_200331 (4738-4329)
               

               
               1-596, gnl|panTro1|chrX (129199129-129199499)
               

               
               1-596, gnl|rheMac2|chrX (124385293-124385663)
               

               
               1-596, gnl|rn3|chrX (604018-603659)

	40-132, - strand, RNAz p=0.997289
	429-545, - strand, RNAz p=0.840601

	1-596, gnl\|bosTau2\|chrX (2918490-2919087)
	1-596, gnl\|canFam2\|chrX (100468163-100468549)
	1-596, gnl\|hg17\|chrX (125023011-125023378)
	1-596, gnl\|Hg17\|chrX (125023604-125023022)
	1-596, gnl\|loxAfr1\|scaffold_33791 (18281-17906)
	1-596, gnl\|mm7\|chrX (39457728-39458105)
	1-596, gnl\|Mm7\|chrX (39458321-39457734)
	1-596, gnl\|oryCun1\|scaffold_200331 (4738-4329)
	1-596, gnl\|panTro1\|chrX (129199129-129199499)
	1-596, gnl\|rheMac2\|chrX (124385293-124385663)
	1-596, gnl\|rn3\|chrX (604018-603659)