Non-Coding RNA Search

Mixn-0027g09

Sequence:


               
               CCGGAAGGCGCTCAAGTTCACCTGCAGCCGCAAGCCCAGCCCGGACCCTGCTCTGACGAC
CAAGTCCACCCTGACCTCGTCCTACAACTGCCCCAGCCCTTATGCGGACGGAAGGCTGTA
TCAGCCCTACGGAGATTCAGCTGGCTCTCTGCACAGTGCCAGCCGCTCCGGCAAGAGTCA
GCCCAGCTACATCCCCTTCTTGCTGCGGGAAGAGTCCACACTGAACCCTGGTCAGGGGCC
CCCTGGCCTGGGGGACCCGGGGAGCCTGTTCCTGGAAGGTCAAGACCAGCAGCATGATCC
CGACACGGACTCTGACAGTGACCTGTCCCTGGAAGATGACCAGAGTGGCTCCTATGCCTC
TACCCACTCGTCAGACAGCGAGGAGGAGGAGCGGGAGGCCGCCTTCCCTGGAGAACCAGG
CTGGGACAGCCTGCTGGGGCCTGGGGCCGAGAGGCTGCCCCTGCACAGCACCCCCAAGGA
TGGGGGCCTGGGGCCCGGAAAGGTCCCCTGGCCAGGAGACTTTGGGACCCCAGCAAAGGA
GGGTGGTGGGAATGGGACTTCTGACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAAGGCGCTCAAGTTCACCTGCAGCCGCAAGCCCAGCCCGGACCCTGCTCTGACGAC
CAAGTCCACCCTGACCTCGTCCTACAACTGCCCCAGCCCTTATGCGGACGGAAGGCTGTA
TCAGCCCTACGGAGATTCAGCTGGCTCTCTGCACAGTGCCAGCCGCTCCGGCAAGAGTCA
GCCCAGCTACATCCCCTTCTTGCTGCGGGAAGAGTCCACACTGAACCCTGGTCAGGGGCC
CCCTGGCCTGGGGGACCCGGGGAGCCTGTTCCTGGAAGGTCAAGACCAGCAGCATGATCC
CGACACGGACTCTGACAGTGACCTGTCCCTGGAAGATGACCAGAGTGGCTCCTATGCCTC
TACCCACTCGTCAGACAGCGAGGAGGAGGAGCGGGAGGCCGCCTTCCCTGGAGAACCAGG
CTGGGACAGCCTGCTGGGGCCTGGGGCCGAGAGGCTGCCCCTGCACAGCACCCCCAAGGA
TGGGGGCCTGGGGCCCGGAAAGGTCCCCTGGCCAGGAGACTTTGGGACCCCAGCAAAGGA
GGGTGGTGGGAATGGGACTTCTGACGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZSX5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZSX5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               90-208, - strand, RNAz p=0.685347
               

               
               375-484, - strand, RNAz p=0.850283

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-208, - strand, RNAz p=0.685347
               

               
               375-484, - strand, RNAz p=0.850283

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               74-208, gnl|bosTau2|chr3 (30507671-30507537)
               

               
               74-208, gnl|Hg17|chr1 (109526936-109527070)
               

               
               74-208, gnl|Mm7|chr3 (108212634-108212500)
               


               
               296-484, gnl|bosTau2|chr3 (30507093-30506893)
               

               
               296-484, gnl|Hg17|chr1 (109527496-109527696)
               

               
               296-484, gnl|Mm7|chr3 (108212121-108211933)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-208, gnl|bosTau2|chr3 (30507671-30507537)
               

               
               74-208, gnl|Hg17|chr1 (109526936-109527070)
               

               
               74-208, gnl|Mm7|chr3 (108212634-108212500)
               


               
               296-484, gnl|bosTau2|chr3 (30507093-30506893)
               

               
               296-484, gnl|Hg17|chr1 (109527496-109527696)
               

               
               296-484, gnl|Mm7|chr3 (108212121-108211933)

	90-208, - strand, RNAz p=0.685347
	375-484, - strand, RNAz p=0.850283

	74-208, gnl\|bosTau2\|chr3 (30507671-30507537)
	74-208, gnl\|Hg17\|chr1 (109526936-109527070)
	74-208, gnl\|Mm7\|chr3 (108212634-108212500)

	296-484, gnl\|bosTau2\|chr3 (30507093-30506893)
	296-484, gnl\|Hg17\|chr1 (109527496-109527696)
	296-484, gnl\|Mm7\|chr3 (108212121-108211933)