Non-Coding RNA Search

Mixn-0028e17

Sequence:


               
               CCTGTACTGCAGCCAAGACGGGCTGCAGTGTGGGGGCTACTCCTCCTGCCCCATGCTCCC
TGAAGGCAAGCTGTCCCCAGTGGCTGCACCTAACGAGGGGCTTCTCTTGGCCCCGAGCTC
AGTGCCTGCTGGCACCCCTTTCCAGCATCCTCCATGGGGTTCTCGCTACTGCTCCAGTGA
GGACGCTGGAGTGAATGGCTACAGCATCTGTGAAATGTTGTCCCCGTCTCTTTCCCACAT
CGGCACTGCCTGTGGTGGCTGCCCCTACAAAATGCCTTTTGCAGCAGAAGGCTGCAGGTC
CCTGGGCCAGCTGGAATTTCCTCTCCCGGAAGCTGGCCACCCTGCCTCACCTGCCCACCC
CCTCCTTGGATGCCCTGTGCCCAGCGTACCACTGCAGACAAGAGCCCTGTCCCCNNCNNC
NNACACCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTACTGCAGCCAAGACGGGCTGCAGTGTGGGGGCTACTCCTCCTGCCCCATGCTCCC
TGAAGGCAAGCTGTCCCCAGTGGCTGCACCTAACGAGGGGCTTCTCTTGGCCCCGAGCTC
AGTGCCTGCTGGCACCCCTTTCCAGCATCCTCCATGGGGTTCTCGCTACTGCTCCAGTGA
GGACGCTGGAGTGAATGGCTACAGCATCTGTGAAATGTTGTCCCCGTCTCTTTCCCACAT
CGGCACTGCCTGTGGTGGCTGCCCCTACAAAATGCCTTTTGCAGCAGAAGGCTGCAGGTC
CCTGGGCCAGCTGGAATTTCCTCTCCCGGAAGCTGGCCACCCTGCCTCACCTGCCCACCC
CCTCCTTGGATGCCCTGTGCCCAGCGTACCACTGCAGACAAGAGCCCTGTCCCCNNCNNC
NNACACCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-245, + strand, RNAz p=0.962062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-245, + strand, RNAz p=0.962062

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               39-238, - strand, RNAmicro p=0.99999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-238, - strand, RNAmicro p=0.99999

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-287, gnl|bosTau2|chr10 (27070287-27070572)
               

               
               2-287, gnl|canFam2|chr30 (10620505-10620816)
               

               
               2-287, gnl|dasNov1|scaffold_143451 (4076-4390)
               

               
               2-287, gnl|echTel1|scaffold_323039 (40071-39754)
               

               
               2-287, gnl|galGal2|chr5 (2606454-2606140)
               

               
               2-287, gnl|hg17|chr15 (38539076-38539393)
               

               
               2-287, gnl|Hg17|chr15 (38539096-38539387)
               

               
               2-287, gnl|loxAfr1|scaffold_23235 (5877-6191)
               

               
               2-287, gnl|mm7|chr2 (118657850-118658164)
               

               
               2-287, gnl|Mm7|chr2 (118657870-118658158)
               

               
               2-287, gnl|monDom2|scaffold_12 (1847020-1846697)
               

               
               2-287, gnl|oryCun1|scaffold_214159 (46764-46450)
               

               
               2-287, gnl|panTro1|chr16 (38423381-38423698)
               

               
               2-287, gnl|rheMac2|chr7 (18802080-18802397)
               

               
               2-287, gnl|rn3|chr3 (105326555-105326869)
               

               
               2-287, gnl|xenTro1|scaffold_933 (298395-298072)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-287, gnl|bosTau2|chr10 (27070287-27070572)
               

               
               2-287, gnl|canFam2|chr30 (10620505-10620816)
               

               
               2-287, gnl|dasNov1|scaffold_143451 (4076-4390)
               

               
               2-287, gnl|echTel1|scaffold_323039 (40071-39754)
               

               
               2-287, gnl|galGal2|chr5 (2606454-2606140)
               

               
               2-287, gnl|hg17|chr15 (38539076-38539393)
               

               
               2-287, gnl|Hg17|chr15 (38539096-38539387)
               

               
               2-287, gnl|loxAfr1|scaffold_23235 (5877-6191)
               

               
               2-287, gnl|mm7|chr2 (118657850-118658164)
               

               
               2-287, gnl|Mm7|chr2 (118657870-118658158)
               

               
               2-287, gnl|monDom2|scaffold_12 (1847020-1846697)
               

               
               2-287, gnl|oryCun1|scaffold_214159 (46764-46450)
               

               
               2-287, gnl|panTro1|chr16 (38423381-38423698)
               

               
               2-287, gnl|rheMac2|chr7 (18802080-18802397)
               

               
               2-287, gnl|rn3|chr3 (105326555-105326869)
               

               
               2-287, gnl|xenTro1|scaffold_933 (298395-298072)

	2-287, gnl\|bosTau2\|chr10 (27070287-27070572)
	2-287, gnl\|canFam2\|chr30 (10620505-10620816)
	2-287, gnl\|dasNov1\|scaffold_143451 (4076-4390)
	2-287, gnl\|echTel1\|scaffold_323039 (40071-39754)
	2-287, gnl\|galGal2\|chr5 (2606454-2606140)
	2-287, gnl\|hg17\|chr15 (38539076-38539393)
	2-287, gnl\|Hg17\|chr15 (38539096-38539387)
	2-287, gnl\|loxAfr1\|scaffold_23235 (5877-6191)
	2-287, gnl\|mm7\|chr2 (118657850-118658164)
	2-287, gnl\|Mm7\|chr2 (118657870-118658158)
	2-287, gnl\|monDom2\|scaffold_12 (1847020-1846697)
	2-287, gnl\|oryCun1\|scaffold_214159 (46764-46450)
	2-287, gnl\|panTro1\|chr16 (38423381-38423698)
	2-287, gnl\|rheMac2\|chr7 (18802080-18802397)
	2-287, gnl\|rn3\|chr3 (105326555-105326869)
	2-287, gnl\|xenTro1\|scaffold_933 (298395-298072)