Mixn-0028g21
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TTTGGCCAATTTCCAATTCCTCAGAGAGGGACAAAGTGTTGTCTCATTGCCACCTGCTAT
TAACTAAATACTTAGGATTCAGTGTCCTACGGGTGACTGGGAGACATGGGAATGGATTAT
TGTGGCAGCCTGTAGAACCTCCTTCCCTGGGGAATTTTGAGAACAGCAAAGAACCATCTG
TCTTGGGTGGTTTTAAGAACAGCCCTGCCTAAAGGCAGGTGCATGGATTAGATGACCTGT
AAAGATTGTCATCCATCCCATTGACTTCAATGGAAAGGATGCATTTGCTGAGTTTGAAAA
GAGTCCAGGCAGAACACTGACAGGTTTGGGGAGCATATGGTCAAGAGCCTGAGGGTATTC
AGACTTTCTTGAAATTGGAGCCACTCACTGTGCCCTGAATTCAAGAATACCATCCTCTAC
ATGTGAACTCAGCATTAACTTATTCCACCCTTGAAAGTTATATCCATATGTAGTTCAAAT
TGGAGTAGTTAAAATCTTTGATCACAAGTACAGTTCTTTAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TTTGGCCAATTTCCAATTCCTCAGAGAGGGACAAAGTGTTGTCTCATTGCCACCTGCTAT
TAACTAAATACTTAGGATTCAGTGTCCTACGGGTGACTGGGAGACATGGGAATGGATTAT
TGTGGCAGCCTGTAGAACCTCCTTCCCTGGGGAATTTTGAGAACAGCAAAGAACCATCTG
TCTTGGGTGGTTTTAAGAACAGCCCTGCCTAAAGGCAGGTGCATGGATTAGATGACCTGT
AAAGATTGTCATCCATCCCATTGACTTCAATGGAAAGGATGCATTTGCTGAGTTTGAAAA
GAGTCCAGGCAGAACACTGACAGGTTTGGGGAGCATATGGTCAAGAGCCTGAGGGTATTC
AGACTTTCTTGAAATTGGAGCCACTCACTGTGCCCTGAATTCAAGAATACCATCCTCTAC
ATGTGAACTCAGCATTAACTTATTCCACCCTTGAAAGTTATATCCATATGTAGTTCAAAT
TGGAGTAGTTAAAATCTTTGATCACAAGTACAGTTCTTTAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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156-305, RC2-DT0002-290200-016-f05 DT0002 Homo sapiens cDNA, mRNA sequence
(gb|AW935065.1|), blast E-value=0, identity=92.67% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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156-305, RC2-DT0002-290200-016-f05 DT0002 Homo sapiens cDNA, mRNA sequence
(gb|AW935065.1|), blast E-value=0, identity=92.67% |
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1-519, gnl|bosTau2|chr1 (48816050-48816575) |
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1-519, gnl|canFam2|chr34 (24023901-24024836) |
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1-519, gnl|dasNov1|scaffold_516 (96123-96948) |
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1-519, gnl|echTel1|scaffold_313721 (75433-74397) |
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1-519, gnl|hg17|chr3 (189934489-189935433) |
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1-519, gnl|Hg17|chr3 (189935013-189935536) |
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1-519, gnl|loxAfr1|scaffold_31094 (34919-35889) |
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1-519, gnl|mm7|chr16 (24526467-24527309) |
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1-519, gnl|Mm7|chr16 (24526916-24527410) |
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1-519, gnl|oryCun1|scaffold_190982 (4879-3967) |
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1-519, gnl|panTro1|chr2 (194020065-194021009) |
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1-519, gnl|rheMac2|chr2 (181064271-181065217) |
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1-519, gnl|rn3|chr11 (78155541-78154662) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-519, gnl|bosTau2|chr1 (48816050-48816575) |
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1-519, gnl|canFam2|chr34 (24023901-24024836) |
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1-519, gnl|dasNov1|scaffold_516 (96123-96948) |
|
1-519, gnl|echTel1|scaffold_313721 (75433-74397) |
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1-519, gnl|hg17|chr3 (189934489-189935433) |
|
1-519, gnl|Hg17|chr3 (189935013-189935536) |
|
1-519, gnl|loxAfr1|scaffold_31094 (34919-35889) |
|
1-519, gnl|mm7|chr16 (24526467-24527309) |
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1-519, gnl|Mm7|chr16 (24526916-24527410) |
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1-519, gnl|oryCun1|scaffold_190982 (4879-3967) |
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1-519, gnl|panTro1|chr2 (194020065-194021009) |
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1-519, gnl|rheMac2|chr2 (181064271-181065217) |
|
1-519, gnl|rn3|chr11 (78155541-78154662) |
