Non-Coding RNA Search

Mixn-0028h07

Sequence:


               
               GTTACAGTAACCCATGTGGAACTCTGCCTGTGCTTACCTGGGCAGAGTGTGGGATGTGGC
CTGGGCAGGATGTGGCCATGGGCATCTGGCCCTACAGGTTCCTCCGCCAGGCCATTTCCA
TCGCACCGCACCCCGGCCTCCTGCCCCCACCATCGCTCCAGCCCTCACCCCAAACTCCCT
ATGACCTCCGAGGCTGGCGGCTTTGGCAGCCCCAGAAAGGGGTGCCAGGCACCCTGTTAC
CCAGGTGGGGTAGCCGCTTCCTGTTCCGATGCTGTCTCCGGGTCTCCCTGGGGTCTGGCA
TCTCTGGGAGGCCCCATCTCTGGCTCCAGGTCTCTCTCTGTCCTCCACTGCCCCTCCCCC
TCCCCACTAGGTTTCCGGAACAGGAAACGTCAGGGTCCCAAGGTTGGGTCCCAGGTGAGG
GCGGAGGAGAAGGAAGTAGCAGAGGCAGAGCTTCTCCTCCCACCCCCACCGCCTAGCTGA
GAGTGGGGGTGGGGAGAAAGAGGGGGCTTCATTAATGAACCTCTAATTCGGCCATGCGGG
ATCTTAACGAGGTGGATGGGCCTTATTAGAGAGCAAGAGCCCTGGCATTAGTGCCTGCCT
GTGTCACACCCCTCTTCCGGGGCTGGTGTCTGGATCCTCAGCGGCCCTGGGAAATTGGGG
CA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACAGTAACCCATGTGGAACTCTGCCTGTGCTTACCTGGGCAGAGTGTGGGATGTGGC
CTGGGCAGGATGTGGCCATGGGCATCTGGCCCTACAGGTTCCTCCGCCAGGCCATTTCCA
TCGCACCGCACCCCGGCCTCCTGCCCCCACCATCGCTCCAGCCCTCACCCCAAACTCCCT
ATGACCTCCGAGGCTGGCGGCTTTGGCAGCCCCAGAAAGGGGTGCCAGGCACCCTGTTAC
CCAGGTGGGGTAGCCGCTTCCTGTTCCGATGCTGTCTCCGGGTCTCCCTGGGGTCTGGCA
TCTCTGGGAGGCCCCATCTCTGGCTCCAGGTCTCTCTCTGTCCTCCACTGCCCCTCCCCC
TCCCCACTAGGTTTCCGGAACAGGAAACGTCAGGGTCCCAAGGTTGGGTCCCAGGTGAGG
GCGGAGGAGAAGGAAGTAGCAGAGGCAGAGCTTCTCCTCCCACCCCCACCGCCTAGCTGA
GAGTGGGGGTGGGGAGAAAGAGGGGGCTTCATTAATGAACCTCTAATTCGGCCATGCGGG
ATCTTAACGAGGTGGATGGGCCTTATTAGAGAGCAAGAGCCCTGGCATTAGTGCCTGCCT
GTGTCACACCCCTCTTCCGGGGCTGGTGTCTGGATCCTCAGCGGCCCTGGGAAATTGGGG
CA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-157, - strand, RNAz p=0.785972
               

               
               198-299, - strand, RNAz p=0.622796
               

               
               459-563, - strand, RNAz p=0.660442

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-157, - strand, RNAz p=0.785972
               

               
               198-299, - strand, RNAz p=0.622796
               

               
               459-563, - strand, RNAz p=0.660442

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               463-545, + strand, RNAmicro p=0.999196

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               463-545, + strand, RNAmicro p=0.999196

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-633, gnl|bosTau2|chr18 (42320196-42319551)
               

               
               1-633, gnl|Hg17|chr19 (44378387-44379007)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-633, gnl|bosTau2|chr18 (42320196-42319551)
               

               
               1-633, gnl|Hg17|chr19 (44378387-44379007)

	1-157, - strand, RNAz p=0.785972
	198-299, - strand, RNAz p=0.622796
	459-563, - strand, RNAz p=0.660442

	1-633, gnl\|bosTau2\|chr18 (42320196-42319551)
	1-633, gnl\|Hg17\|chr19 (44378387-44379007)