Non-Coding RNA Search

Mixn-0028p19

Sequence:


               
               GAGTTCTGGGAACACCACCGATGAGGTCCCCGGCCTCCTGCCTCCCCCAGGAGAGGCGGC
TGATGCCACGGGGATGGTTGCCGACGCCGGTGTCTTTGAGGGCACGGTGACCTCTCTCCC
TGGAGAGGGTGGCGACACAAAGTCTGGAGAGGGAGGAGGTGCGGCCCTCGCGGACAGCCT
GGGCGCGCAGGGCACGCAGGGCGTGCAGGGCGGGGAAGGTTCTCGGGAGGCCCAGCCCCG
CCCCTTCCGCTGCAACCAGTGCGGCAAGACCTACCGCCACGGGGGCAGCCTGGTGAACCA
CCGCAAGATCCACCAGACGGGGGACTTCACCTGCCCGGTCTGCTCGCGCTGCTACCCCAA
CCTGGCCGCCTACCGCAATCATCTGCGGAACCACCCGCGCTGCAAAGGCTCGGAGCCCCA
GGTGGGGCCAGTCCCGGAGGCCGGAGGCAGCAGCGAGCCCCAGAACCCGGCAGAGGAGGG
CCAAGGGCAGGCCGAGGGCGAGAAGTTCCCGAAAGAACCTCAAATAGAGCCCGCGGAGGA
GGTGGCGGGGGTGAAGGAAGAGACCTGGGAGGAGACCGCCGGGAAGCGGGAGGAGATGGA
GCCCTGGCTGGAGACGGCGGCGGAGAAGGGCTGCCAGCCAGAGGCCCCCTCCGAGCGGNC
CTTCAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTCTGGGAACACCACCGATGAGGTCCCCGGCCTCCTGCCTCCCCCAGGAGAGGCGGC
TGATGCCACGGGGATGGTTGCCGACGCCGGTGTCTTTGAGGGCACGGTGACCTCTCTCCC
TGGAGAGGGTGGCGACACAAAGTCTGGAGAGGGAGGAGGTGCGGCCCTCGCGGACAGCCT
GGGCGCGCAGGGCACGCAGGGCGTGCAGGGCGGGGAAGGTTCTCGGGAGGCCCAGCCCCG
CCCCTTCCGCTGCAACCAGTGCGGCAAGACCTACCGCCACGGGGGCAGCCTGGTGAACCA
CCGCAAGATCCACCAGACGGGGGACTTCACCTGCCCGGTCTGCTCGCGCTGCTACCCCAA
CCTGGCCGCCTACCGCAATCATCTGCGGAACCACCCGCGCTGCAAAGGCTCGGAGCCCCA
GGTGGGGCCAGTCCCGGAGGCCGGAGGCAGCAGCGAGCCCCAGAACCCGGCAGAGGAGGG
CCAAGGGCAGGCCGAGGGCGAGAAGTTCCCGAAAGAACCTCAAATAGAGCCCGCGGAGGA
GGTGGCGGGGGTGAAGGAAGAGACCTGGGAGGAGACCGCCGGGAAGCGGGAGGAGATGGA
GCCCTGGCTGGAGACGGCGGCGGAGAAGGGCTGCCAGCCAGAGGCCCCCTCCGAGCGGNC
CTTCAGCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-159, - strand, RNAz p=0.944723
               

               
               280-399, - strand, RNAz p=0.668864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.944723
               

               
               280-399, - strand, RNAz p=0.668864

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-596, gnl|bosTau2|chr25 (22953262-22953836)
               

               
               1-596, gnl|Hg17|chr16 (30998086-30998658)
               

               
               1-596, gnl|Mm7|chr7 (123978099-123978632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr25 (22953262-22953836)
               

               
               1-596, gnl|Hg17|chr16 (30998086-30998658)
               

               
               1-596, gnl|Mm7|chr7 (123978099-123978632)

	40-159, - strand, RNAz p=0.944723
	280-399, - strand, RNAz p=0.668864

	1-596, gnl\|bosTau2\|chr25 (22953262-22953836)
	1-596, gnl\|Hg17\|chr16 (30998086-30998658)
	1-596, gnl\|Mm7\|chr7 (123978099-123978632)