Non-Coding RNA Search

Mixn-0029g10

Sequence:


               
               GGATTTTTGTCTGGGTTCCTTAATGAGACGAAAGGCATTCTTCCCTCAGTGTTTGGTTTT
GTCTCATAAATTGATGCCAATCCCTTTACGGAGTGACATGACTCATCCCTACCTTCTCAT
AAACCAGTCTGACTCTCCCTCAGGACTTCTCACTATCCTATTCTGGACTAGCCTTTCAAG
AGCTTTCTTCTGCAAGAAAGGGTGAGGGCTTCATGAGATGATCAGCACGGCATGCCCGCT
GCTCCGGGAGGGAATCAGAGGCAGGCATCTGCCGCTCCCCAAATTAGCAGGAAACAGGAG
CAGGGAAGAGACGTTACCGGGGAGCCACTTTAGGGATCATCTGGCTTTCAGCATTTCAAA
CCAGATGTGGACTCTCAAGGTGGCAGCAGAGCTCATCCCAGAGTCTGTCTTCACCAAAAC
GAGGATCTGGTTAACCTGATCCAAGGGTGCCTCCTGCCCACTCAAGGAGCTTGGGACTGG
TATTGCGGCCAATGCTAACTGTGTACTTTTTTGTCCCCCCAAAAGGCTCAAAGCATTTTT
TTTGACATTAAATGCATCAGTGCTCACGACAAACCTCCGAGAGGTGGCAAAATACTAGTT
CAGGTGTGAGAAATTGGGGGACGGGGCTGAGGAGAACGAAGTCCTCCGCCAAGTCTAAGG
CCGTAGGAGGGCTCCCAGAGCCAGGCCCACACCACTGCCCTTGTGGGACCTGGTCCCTTC
CTTCCCAGGCTTGCTCCAGACTGCCTGGGCTAGCCTGCTCTTTGTCCAGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTTTGTCTGGGTTCCTTAATGAGACGAAAGGCATTCTTCCCTCAGTGTTTGGTTTT
GTCTCATAAATTGATGCCAATCCCTTTACGGAGTGACATGACTCATCCCTACCTTCTCAT
AAACCAGTCTGACTCTCCCTCAGGACTTCTCACTATCCTATTCTGGACTAGCCTTTCAAG
AGCTTTCTTCTGCAAGAAAGGGTGAGGGCTTCATGAGATGATCAGCACGGCATGCCCGCT
GCTCCGGGAGGGAATCAGAGGCAGGCATCTGCCGCTCCCCAAATTAGCAGGAAACAGGAG
CAGGGAAGAGACGTTACCGGGGAGCCACTTTAGGGATCATCTGGCTTTCAGCATTTCAAA
CCAGATGTGGACTCTCAAGGTGGCAGCAGAGCTCATCCCAGAGTCTGTCTTCACCAAAAC
GAGGATCTGGTTAACCTGATCCAAGGGTGCCTCCTGCCCACTCAAGGAGCTTGGGACTGG
TATTGCGGCCAATGCTAACTGTGTACTTTTTTGTCCCCCCAAAAGGCTCAAAGCATTTTT
TTTGACATTAAATGCATCAGTGCTCACGACAAACCTCCGAGAGGTGGCAAAATACTAGTT
CAGGTGTGAGAAATTGGGGGACGGGGCTGAGGAGAACGAAGTCCTCCGCCAAGTCTAAGG
CCGTAGGAGGGCTCCCAGAGCCAGGCCCACACCACTGCCCTTGTGGGACCTGGTCCCTTC
CTTCCCAGGCTTGCTCCAGACTGCCTGGGCTAGCCTGCTCTTTGTCCAGTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               318-433, - strand, RNAz p=0.951814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-433, - strand, RNAz p=0.951814

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-773, gnl|bosTau2|chr15 (5464432-5465209)
               

               
               1-773, gnl|Hg17|chr14 (67676745-67675962)
               

               
               1-773, gnl|Mm7|chr12 (77470102-77469337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-773, gnl|bosTau2|chr15 (5464432-5465209)
               

               
               1-773, gnl|Hg17|chr14 (67676745-67675962)
               

               
               1-773, gnl|Mm7|chr12 (77470102-77469337)

	1-773, gnl\|bosTau2\|chr15 (5464432-5465209)
	1-773, gnl\|Hg17\|chr14 (67676745-67675962)
	1-773, gnl\|Mm7\|chr12 (77470102-77469337)