Non-Coding RNA Search

Mixn-0029h22

Sequence:


               
               TCGATGCCTGGACGGCTGGACTGGGCCTCTCTGCACAGTCCCCGTCTCCACCAGCAGCTG
CCTCAGCCCCAGGGGCCCATCCTCGGCCACCACTGGATGCCTCGTACCCGGGCCTGGGCC
CTGTGATGGGAACCCGTGTGCCAACGGGGGCAGCTGTAGTGAGACACTGGGGTCCTTCGA
ATGCACCTGTCCCCGTGGGTTCTACGGGCTGCGGTGTGAGGTGAGCGGGGTGACGTGTGC
GGATGGACCTTGCTTCAATGGCGGCTTGTGTGTGGGAGGCGCAGACCCAGACTCTGCCTA
CATTTGCCACTGCCCACCTGGTTTCCAAGGCTCCAACTGTGAGAAGAGGGTGGACCGCTG
CAGTCTGCAGCCATGCCGGAATGGCGGGCTCTGCCTGGACCTGTGCCACGCTCTGCGCTG
CCGCTGCCGCGCCGGCTTCGCGGGGCCGCGCTGCGAGCACGACCTGGATGACTGCGCCGG
CCGCGCCTGCGCCAACGGCGGCACCTGCCTGGAGGGCGGCGGCGCGCGCCGCTGCTCCTG
CGCGCTGGGCTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGATGCCTGGACGGCTGGACTGGGCCTCTCTGCACAGTCCCCGTCTCCACCAGCAGCTG
CCTCAGCCCCAGGGGCCCATCCTCGGCCACCACTGGATGCCTCGTACCCGGGCCTGGGCC
CTGTGATGGGAACCCGTGTGCCAACGGGGGCAGCTGTAGTGAGACACTGGGGTCCTTCGA
ATGCACCTGTCCCCGTGGGTTCTACGGGCTGCGGTGTGAGGTGAGCGGGGTGACGTGTGC
GGATGGACCTTGCTTCAATGGCGGCTTGTGTGTGGGAGGCGCAGACCCAGACTCTGCCTA
CATTTGCCACTGCCCACCTGGTTTCCAAGGCTCCAACTGTGAGAAGAGGGTGGACCGCTG
CAGTCTGCAGCCATGCCGGAATGGCGGGCTCTGCCTGGACCTGTGCCACGCTCTGCGCTG
CCGCTGCCGCGCCGGCTTCGCGGGGCCGCGCTGCGAGCACGACCTGGATGACTGCGCCGG
CCGCGCCTGCGCCAACGGCGGCACCTGCCTGGAGGGCGGCGGCGCGCGCCGCTGCTCCTG
CGCGCTGGGCTTCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-161, - strand, RNAz p=0.850564

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-161, - strand, RNAz p=0.850564

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-161, gnl|bosTau2|chr18 (43679882-43679722)
               

               
               1-161, gnl|canFam2|chr1 (116650194-116650046)
               

               
               1-161, gnl|danRer3|chr15 (8744073-8744340)
               

               
               1-161, gnl|dasNov1|scaffold_97127 (3828-3677)
               

               
               1-161, gnl|echTel1|scaffold_224315 (3419-3265)
               

               
               1-161, gnl|fr1|chrUn (152800457-152800336)
               

               
               1-161, gnl|hg17|chr19 (44686579-44686730)
               

               
               1-161, gnl|Hg17|chr19 (44686609-44686769)
               

               
               1-161, gnl|mm7|chr7 (25232608-25232457)
               

               
               1-161, gnl|Mm7|chr7 (25232576-25232416)
               

               
               1-161, gnl|oryCun1|scaffold_166664 (937-1091)
               

               
               1-161, gnl|panTro1|chr20 (41676786-41676937)
               

               
               1-161, gnl|rheMac2|chr19 (45854070-45854221)
               

               
               1-161, gnl|rn3|chr1 (83455781-83455630)
               

               
               1-161, gnl|tetNig1|chrUn_random (88860386-88860230)
               

               
               1-161, gnl|xenTro1|scaffold_423 (725007-724832)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr18 (43679882-43679722)
               

               
               1-161, gnl|canFam2|chr1 (116650194-116650046)
               

               
               1-161, gnl|danRer3|chr15 (8744073-8744340)
               

               
               1-161, gnl|dasNov1|scaffold_97127 (3828-3677)
               

               
               1-161, gnl|echTel1|scaffold_224315 (3419-3265)
               

               
               1-161, gnl|fr1|chrUn (152800457-152800336)
               

               
               1-161, gnl|hg17|chr19 (44686579-44686730)
               

               
               1-161, gnl|Hg17|chr19 (44686609-44686769)
               

               
               1-161, gnl|mm7|chr7 (25232608-25232457)
               

               
               1-161, gnl|Mm7|chr7 (25232576-25232416)
               

               
               1-161, gnl|oryCun1|scaffold_166664 (937-1091)
               

               
               1-161, gnl|panTro1|chr20 (41676786-41676937)
               

               
               1-161, gnl|rheMac2|chr19 (45854070-45854221)
               

               
               1-161, gnl|rn3|chr1 (83455781-83455630)
               

               
               1-161, gnl|tetNig1|chrUn_random (88860386-88860230)
               

               
               1-161, gnl|xenTro1|scaffold_423 (725007-724832)

	1-161, gnl\|bosTau2\|chr18 (43679882-43679722)
	1-161, gnl\|canFam2\|chr1 (116650194-116650046)
	1-161, gnl\|danRer3\|chr15 (8744073-8744340)
	1-161, gnl\|dasNov1\|scaffold_97127 (3828-3677)
	1-161, gnl\|echTel1\|scaffold_224315 (3419-3265)
	1-161, gnl\|fr1\|chrUn (152800457-152800336)
	1-161, gnl\|hg17\|chr19 (44686579-44686730)
	1-161, gnl\|Hg17\|chr19 (44686609-44686769)
	1-161, gnl\|mm7\|chr7 (25232608-25232457)
	1-161, gnl\|Mm7\|chr7 (25232576-25232416)
	1-161, gnl\|oryCun1\|scaffold_166664 (937-1091)
	1-161, gnl\|panTro1\|chr20 (41676786-41676937)
	1-161, gnl\|rheMac2\|chr19 (45854070-45854221)
	1-161, gnl\|rn3\|chr1 (83455781-83455630)
	1-161, gnl\|tetNig1\|chrUn_random (88860386-88860230)
	1-161, gnl\|xenTro1\|scaffold_423 (725007-724832)