Non-Coding RNA Search

Mixn-0029j18

Sequence:


               
               GCGGGCAGCGGGGCCCTGCCCCTCAATGGGCTCCTGGGGGGGTTGAATGGGGCTGCCGCC
CCCAACCCTGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGTTGT
CTCAACAGGTGAGGGAGAGCTCAGCCTGGGGGAGGGAACGGGGAGGCTGGCTCTGGGAGG
GACTCCCCAAACACCCACAGTCCCCCCAAAGGAAAGCTGTCCTCTGGTCTCAGCGGGCGT
AGAATCTCGTCACCTCCTGGCCCCAGGTGCTCCCTAGCCGTTGGATGGTAGCGCCCTCTG
GATGGTAGCTCTCCAGGGACAGAATCGTCAGCTGATTTTTTTGTAGCCAGTCCAGGTTTT
CCCTCTGGGAGAGTTCTTACATCTAGCGTGTTTCCCTCCCGTTGTCCTCTCCGGGCTCAG
TCTGCTTCTCTCTAGTCCTCGAAGAGCCTACAACCCTGCTCCTCTCCACCTGGGTCTGAG
GGAGTCGGCGGGTGGGGGAGCAGTGTGGCCTTGTCCCTTCCCATGGTCTGTGTTCTGTCC
CCCTGCCTCAGCCTAACCGAGCAGCAGAGACACCTCCTGCAGCAGCAAGAGCAGTAGCTC
CAGCAGCTCCAACAGCTCCTGGCCTCCCCGCAGCTGACCCCGGTAACGCCCCTCCCTTCC
CGGCCCCGCCCCTCCCCGGCCCCGCCCATCTCAGAGGGGCGGGGCCTGGCCCCTGCGGAG
CCTCGTGGGGGCAAAGGGGATGAGGGTTCCCTGGCCCCCGGGGAAGGGATGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGCAGCGGGGCCCTGCCCCTCAATGGGCTCCTGGGGGGGTTGAATGGGGCTGCCGCC
CCCAACCCTGCGGGCTTGAGCCAGGCTGGCGGGGCCCCCACGCTGCAGCTGCCAGGTTGT
CTCAACAGGTGAGGGAGAGCTCAGCCTGGGGGAGGGAACGGGGAGGCTGGCTCTGGGAGG
GACTCCCCAAACACCCACAGTCCCCCCAAAGGAAAGCTGTCCTCTGGTCTCAGCGGGCGT
AGAATCTCGTCACCTCCTGGCCCCAGGTGCTCCCTAGCCGTTGGATGGTAGCGCCCTCTG
GATGGTAGCTCTCCAGGGACAGAATCGTCAGCTGATTTTTTTGTAGCCAGTCCAGGTTTT
CCCTCTGGGAGAGTTCTTACATCTAGCGTGTTTCCCTCCCGTTGTCCTCTCCGGGCTCAG
TCTGCTTCTCTCTAGTCCTCGAAGAGCCTACAACCCTGCTCCTCTCCACCTGGGTCTGAG
GGAGTCGGCGGGTGGGGGAGCAGTGTGGCCTTGTCCCTTCCCATGGTCTGTGTTCTGTCC
CCCTGCCTCAGCCTAACCGAGCAGCAGAGACACCTCCTGCAGCAGCAAGAGCAGTAGCTC
CAGCAGCTCCAACAGCTCCTGGCCTCCCCGCAGCTGACCCCGGTAACGCCCCTCCCTTCC
CGGCCCCGCCCCTCCCCGGCCCCGCCCATCTCAGAGGGGCGGGGCCTGGCCCCTGCGGAG
CCTCGTGGGGGCAAAGGGGATGAGGGTTCCCTGGCCCCCGGGGAAGGGATGCTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-225, - strand, RNAz p=0.925211
               

               
               555-656, - strand, RNAz p=0.874553

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-225, - strand, RNAz p=0.925211
               

               
               555-656, - strand, RNAz p=0.874553

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               601-689, - strand, RNAmicro p=0.9107

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               601-689, - strand, RNAmicro p=0.9107

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-433, gnl|bosTau2|chr19 (31559538-31559974)
               

               
               1-433, gnl|Hg17|chr17 (34131879-34132344)
               


               
               462-656, gnl|bosTau2|chr19 (31559971-31560174)
               

               
               462-656, gnl|Hg17|chr17 (34132341-34132579)
               

               
               462-656, gnl|Mm7|chr11 (97787911-97788116)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-433, gnl|bosTau2|chr19 (31559538-31559974)
               

               
               1-433, gnl|Hg17|chr17 (34131879-34132344)
               


               
               462-656, gnl|bosTau2|chr19 (31559971-31560174)
               

               
               462-656, gnl|Hg17|chr17 (34132341-34132579)
               

               
               462-656, gnl|Mm7|chr11 (97787911-97788116)

	120-225, - strand, RNAz p=0.925211
	555-656, - strand, RNAz p=0.874553

	1-433, gnl\|bosTau2\|chr19 (31559538-31559974)
	1-433, gnl\|Hg17\|chr17 (34131879-34132344)

	462-656, gnl\|bosTau2\|chr19 (31559971-31560174)
	462-656, gnl\|Hg17\|chr17 (34132341-34132579)
	462-656, gnl\|Mm7\|chr11 (97787911-97788116)