Non-Coding RNA Search

Mixn-0029m02

Sequence:


               
               CACGCACACACACATACCACTCCCTCCCTCCCGCTTGCGCTCGCTCTCTCCCCCTCTCGG
CTCTGCCTCACTCTGGCTTGTAGGAAGCCAGTGGGATAAAACTCTGTCTGTAATTTCAGC
CAGCTGGGTCCCCAGGGCTTCACTTATCATCCTGTAGCTATGCAGTTCTCAAATGACATC
ACAGTGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCACACACACATACCACTCCCTCCCTCCCGCTTGCGCTCGCTCTCTCCCCCTCTCGG
CTCTGCCTCACTCTGGCTTGTAGGAAGCCAGTGGGATAAAACTCTGTCTGTAATTTCAGC
CAGCTGGGTCCCCAGGGCTTCACTTATCATCCTGTAGCTATGCAGTTCTCAAATGACATC
ACAGTGGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               6-104, - strand, RNAz p=0.718076
               

               
               47-161, - strand, RNAz p=0.66841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-104, - strand, RNAz p=0.718076
               

               
               47-161, - strand, RNAz p=0.66841

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               6-190, gnl|bosTau2|chr2 (63408754-63408942)
               

               
               6-190, gnl|canFam2|chr37 (27634213-27634484)
               

               
               6-190, gnl|dasNov1|scaffold_3075 (87965-88257)
               

               
               6-190, gnl|hg17|chr2 (218548825-218549159)
               

               
               6-190, gnl|Hg17|chr2 (218548899-218549112)
               

               
               6-190, gnl|loxAfr1|scaffold_9897 (32471-32132)
               

               
               6-190, gnl|mm7|chr1 (74205264-74205597)
               

               
               6-190, gnl|Mm7|chr1 (74205337-74205559)
               

               
               6-190, gnl|monDom2|scaffold_39 (2825671-2825398)
               

               
               6-190, gnl|panTro1|chr13 (108706159-108706499)
               

               
               6-190, gnl|rheMac2|chr12 (81669282-81669626)
               

               
               6-190, gnl|rn3|chr9 (73431751-73432065)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-190, gnl|bosTau2|chr2 (63408754-63408942)
               

               
               6-190, gnl|canFam2|chr37 (27634213-27634484)
               

               
               6-190, gnl|dasNov1|scaffold_3075 (87965-88257)
               

               
               6-190, gnl|hg17|chr2 (218548825-218549159)
               

               
               6-190, gnl|Hg17|chr2 (218548899-218549112)
               

               
               6-190, gnl|loxAfr1|scaffold_9897 (32471-32132)
               

               
               6-190, gnl|mm7|chr1 (74205264-74205597)
               

               
               6-190, gnl|Mm7|chr1 (74205337-74205559)
               

               
               6-190, gnl|monDom2|scaffold_39 (2825671-2825398)
               

               
               6-190, gnl|panTro1|chr13 (108706159-108706499)
               

               
               6-190, gnl|rheMac2|chr12 (81669282-81669626)
               

               
               6-190, gnl|rn3|chr9 (73431751-73432065)

	6-104, - strand, RNAz p=0.718076
	47-161, - strand, RNAz p=0.66841

	6-190, gnl\|bosTau2\|chr2 (63408754-63408942)
	6-190, gnl\|canFam2\|chr37 (27634213-27634484)
	6-190, gnl\|dasNov1\|scaffold_3075 (87965-88257)
	6-190, gnl\|hg17\|chr2 (218548825-218549159)
	6-190, gnl\|Hg17\|chr2 (218548899-218549112)
	6-190, gnl\|loxAfr1\|scaffold_9897 (32471-32132)
	6-190, gnl\|mm7\|chr1 (74205264-74205597)
	6-190, gnl\|Mm7\|chr1 (74205337-74205559)
	6-190, gnl\|monDom2\|scaffold_39 (2825671-2825398)
	6-190, gnl\|panTro1\|chr13 (108706159-108706499)
	6-190, gnl\|rheMac2\|chr12 (81669282-81669626)
	6-190, gnl\|rn3\|chr9 (73431751-73432065)