Non-Coding RNA Search

Mixn-0030c06

Sequence:


               
               CCTCTGGATCCGGTTAATTGGATCTGCACTTATATTTCCTGTTGCACCGAGAAGACAAGT
AGGGCAGCCTGAACTGAATTCTTCAAGCTGCCAAGGAAATTGAGCAATTTGGGGAGAGGG
GAAATTATATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGCAA
GCAAGCAAGCAAGAAAGCAAGCAAGCTATCAGTTTCTTCAGGAAAAGCAGATCTTTTTAG
GAAAAGGTCAAAAACGAGAAAGGGAAGGAGAAAACGAAAAAGATTCTTCCTTTTTCTCAC
CTTCCGCCCCCTCGTTTCCCCCGAAATTAGTGCCTTCTTGATTATGTGCAGCTGTTACAA
ACCTCAAGGTTGGTTCCTGGTAGCGAGCGAGCCTCCCGCTTCCAGAACTGAAAAGTCATT
TTTGCGCCAGGACTTTGCTGCTTGAGTTTGGGAAGAAGATTTTGCTCTCCTTCCCTGCAA
ACTGCCCCCAAAGCCTTTCTAACTTCAGCGAGCCCCGCAAGCCTTTGTGCCTCCACCGTT
TAAGTTCCTGCAGCCAGCCTTGGGGCCACAGACGAATTCCCTAGCTAAGAGTGTGGCTTG
AGACCCTCAAAGCTGATTTCCTGCCCAGGAGAGGATGGAGACGTCCTGAGGACGTCGTTG
GTGTGTGTCACCCTGCTTCTGCCTTCCCTCTCGGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGGATCCGGTTAATTGGATCTGCACTTATATTTCCTGTTGCACCGAGAAGACAAGT
AGGGCAGCCTGAACTGAATTCTTCAAGCTGCCAAGGAAATTGAGCAATTTGGGGAGAGGG
GAAATTATATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGCAA
GCAAGCAAGCAAGAAAGCAAGCAAGCTATCAGTTTCTTCAGGAAAAGCAGATCTTTTTAG
GAAAAGGTCAAAAACGAGAAAGGGAAGGAGAAAACGAAAAAGATTCTTCCTTTTTCTCAC
CTTCCGCCCCCTCGTTTCCCCCGAAATTAGTGCCTTCTTGATTATGTGCAGCTGTTACAA
ACCTCAAGGTTGGTTCCTGGTAGCGAGCGAGCCTCCCGCTTCCAGAACTGAAAAGTCATT
TTTGCGCCAGGACTTTGCTGCTTGAGTTTGGGAAGAAGATTTTGCTCTCCTTCCCTGCAA
ACTGCCCCCAAAGCCTTTCTAACTTCAGCGAGCCCCGCAAGCCTTTGTGCCTCCACCGTT
TAAGTTCCTGCAGCCAGCCTTGGGGCCACAGACGAATTCCCTAGCTAAGAGTGTGGCTTG
AGACCCTCAAAGCTGATTTCCTGCCCAGGAGAGGATGGAGACGTCCTGAGGACGTCGTTG
GTGTGTGTCACCCTGCTTCTGCCTTCCCTCTCGGCCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               43-136, + strand, RNAz p=0.913941
               

               
               205-360, - strand, RNAz p=0.854781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-136, + strand, RNAz p=0.913941
               

               
               205-360, - strand, RNAz p=0.854781

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               267-381, - strand, RNAmicro p=0.998263

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               267-381, - strand, RNAmicro p=0.998263

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-136, gnl|bosTau2|chr21 (5736113-5736238)
               

               
               11-136, gnl|Hg17|chr15 (94665372-94665514)
               

               
               11-136, gnl|Mm7|chr7 (66227067-66226918)
               


               
               180-698, gnl|bosTau2|chr21 (5736222-5736757)
               

               
               180-698, gnl|Hg17|chr15 (94665492-94666014)
               

               
               180-698, gnl|Mm7|chr7 (66226937-66226439)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-136, gnl|bosTau2|chr21 (5736113-5736238)
               

               
               11-136, gnl|Hg17|chr15 (94665372-94665514)
               

               
               11-136, gnl|Mm7|chr7 (66227067-66226918)
               


               
               180-698, gnl|bosTau2|chr21 (5736222-5736757)
               

               
               180-698, gnl|Hg17|chr15 (94665492-94666014)
               

               
               180-698, gnl|Mm7|chr7 (66226937-66226439)

	43-136, + strand, RNAz p=0.913941
	205-360, - strand, RNAz p=0.854781

	11-136, gnl\|bosTau2\|chr21 (5736113-5736238)
	11-136, gnl\|Hg17\|chr15 (94665372-94665514)
	11-136, gnl\|Mm7\|chr7 (66227067-66226918)

	180-698, gnl\|bosTau2\|chr21 (5736222-5736757)
	180-698, gnl\|Hg17\|chr15 (94665492-94666014)
	180-698, gnl\|Mm7\|chr7 (66226937-66226439)