Non-Coding RNA Search

Mixn-0030d05

Sequence:


               
               GATGGTGTGGTAGGTGCCGATGTCCTGGATGCCAGACGTGATGGTGACCAGCCCAGATGT
GGGGGAGGCCATGGCAGCCGCCCAGTACCCCAGCTGGGGGGAGATGAAGGTCCAGTAGAG
CTGCCGGCCTTCCTTCCGGATCACGCCAGTGCCATTGCGCACCCACAGCCCACTCTTGGG
GTCGAACCTCCAGGCCGGGATGCTGGTGCCCACAGCAAGGGCACGAGGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTGTGGTAGGTGCCGATGTCCTGGATGCCAGACGTGATGGTGACCAGCCCAGATGT
GGGGGAGGCCATGGCAGCCGCCCAGTACCCCAGCTGGGGGGAGATGAAGGTCCAGTAGAG
CTGCCGGCCTTCCTTCCGGATCACGCCAGTGCCATTGCGCACCCACAGCCCACTCTTGGG
GTCGAACCTCCAGGCCGGGATGCTGGTGCCCACAGCAAGGGCACGAGGCTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               53-150, - strand, RNAz p=0.571454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-150, - strand, RNAz p=0.571454

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               53-171, gnl|bosTau2|chr19 (37956969-37956851)
               

               
               53-171, gnl|canFam2|chr9 (22392581-22392421)
               

               
               53-171, gnl|danRer3|chr25 (18936544-18936395)
               

               
               53-171, gnl|dasNov1|scaffold_27274 (47693-47534)
               

               
               53-171, gnl|echTel1|scaffold_156026 (612-455)
               

               
               53-171, gnl|fr1|chrUn (184714007-184714169)
               

               
               53-171, gnl|galGal2|chr2 (19873639-19873500)
               

               
               53-171, gnl|hg17|chr17 (39788842-39789001)
               

               
               53-171, gnl|Hg17|chr17 (39788851-39788969)
               

               
               53-171, gnl|loxAfr1|scaffold_89038 (3780-3938)
               

               
               53-171, gnl|mm7|chr11 (102548689-102548851)
               

               
               53-171, gnl|Mm7|chr11 (102548698-102548816)
               

               
               53-171, gnl|monDom2|scaffold_18 (42351245-42351081)
               

               
               53-171, gnl|oryCun1|scaffold_203939 (8940-9096)
               

               
               53-171, gnl|panTro1|chr19 (43003742-43003901)
               

               
               53-171, gnl|rheMac2|chr16 (54454368-54454527)
               

               
               53-171, gnl|rn3|chr10 (91559493-91559654)
               

               
               53-171, gnl|tetNig1|chr2 (1740206-1740067)
               

               
               53-171, gnl|xenTro1|scaffold_1230 (132477-132633)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-171, gnl|bosTau2|chr19 (37956969-37956851)
               

               
               53-171, gnl|canFam2|chr9 (22392581-22392421)
               

               
               53-171, gnl|danRer3|chr25 (18936544-18936395)
               

               
               53-171, gnl|dasNov1|scaffold_27274 (47693-47534)
               

               
               53-171, gnl|echTel1|scaffold_156026 (612-455)
               

               
               53-171, gnl|fr1|chrUn (184714007-184714169)
               

               
               53-171, gnl|galGal2|chr2 (19873639-19873500)
               

               
               53-171, gnl|hg17|chr17 (39788842-39789001)
               

               
               53-171, gnl|Hg17|chr17 (39788851-39788969)
               

               
               53-171, gnl|loxAfr1|scaffold_89038 (3780-3938)
               

               
               53-171, gnl|mm7|chr11 (102548689-102548851)
               

               
               53-171, gnl|Mm7|chr11 (102548698-102548816)
               

               
               53-171, gnl|monDom2|scaffold_18 (42351245-42351081)
               

               
               53-171, gnl|oryCun1|scaffold_203939 (8940-9096)
               

               
               53-171, gnl|panTro1|chr19 (43003742-43003901)
               

               
               53-171, gnl|rheMac2|chr16 (54454368-54454527)
               

               
               53-171, gnl|rn3|chr10 (91559493-91559654)
               

               
               53-171, gnl|tetNig1|chr2 (1740206-1740067)
               

               
               53-171, gnl|xenTro1|scaffold_1230 (132477-132633)

	53-171, gnl\|bosTau2\|chr19 (37956969-37956851)
	53-171, gnl\|canFam2\|chr9 (22392581-22392421)
	53-171, gnl\|danRer3\|chr25 (18936544-18936395)
	53-171, gnl\|dasNov1\|scaffold_27274 (47693-47534)
	53-171, gnl\|echTel1\|scaffold_156026 (612-455)
	53-171, gnl\|fr1\|chrUn (184714007-184714169)
	53-171, gnl\|galGal2\|chr2 (19873639-19873500)
	53-171, gnl\|hg17\|chr17 (39788842-39789001)
	53-171, gnl\|Hg17\|chr17 (39788851-39788969)
	53-171, gnl\|loxAfr1\|scaffold_89038 (3780-3938)
	53-171, gnl\|mm7\|chr11 (102548689-102548851)
	53-171, gnl\|Mm7\|chr11 (102548698-102548816)
	53-171, gnl\|monDom2\|scaffold_18 (42351245-42351081)
	53-171, gnl\|oryCun1\|scaffold_203939 (8940-9096)
	53-171, gnl\|panTro1\|chr19 (43003742-43003901)
	53-171, gnl\|rheMac2\|chr16 (54454368-54454527)
	53-171, gnl\|rn3\|chr10 (91559493-91559654)
	53-171, gnl\|tetNig1\|chr2 (1740206-1740067)
	53-171, gnl\|xenTro1\|scaffold_1230 (132477-132633)