Non-Coding RNA Search

Mixn-0030e24

Sequence:


               
               TGCTCCTTGAGGTTGCTCGCCCCCCCAGATTTTGAAATCAGCCCTTCCTGGGGGTGGCCC
AAAAGGAAGCAAATGTTTTATTATTATTATTTTTAAAACACCGTTAGCATCTGGTTTAAT
GATTCTATAAAAACATAACGACTGGATCCGGAGACCACAGCCTCAGACTCATTGGCAAAA
TGGTATTTGGTCTTGCGTTCGCCCGCCCTGGGCTTCTCTACCCGTGAAGTTTCTGGAAAG
GGTCTGGGCAGAGAGACCTGGGGACACATAGCGGGCAGGTGAGTCTGTGACTCTGTATGA
ACCGAAGGACGGTGTTAGGAGTGGAACACCCTCCCCTTTCCCCCCGACCCCCGAGAGTTA
GTGCGGAAGCTGGAAGGGAGAAAAATGTACGGTGCAGTAGTTCCTAAATCCATCCATGGC
TCCGGGGAGGCAGAGCGAGGAACGAGGGGGGCTCCCAGGTGTGTATATACAACAGGGCTT
CTCAGGGTCTATACCTTCCCCAAGACGTCGGGGCGAACCAGGGTGGAGGAGGGGTGGAGG
CTGGGGGGGGGCATCAGGACTCCGAGGATCTTCTTCCAAGGTTCCCTGGCCACTCAGTTC
CCAATGCTTCCCAGGCAGCCAGAAAGAATGCAAAAAAAGAGCGAGGAGAGAGGGCGGGCG
GAGGGGGGCCTGGGAAGGCATTCGAGCAGCTGCAGCTTCCGGATGCGTCCACATCTGTGC
TCCATCTTCTGAAAAAGAAAGTCGCCCCCAAACCATACCACGCCTCTGCCACTGTCAGTT
CCACGCAAAGTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCTTGAGGTTGCTCGCCCCCCCAGATTTTGAAATCAGCCCTTCCTGGGGGTGGCCC
AAAAGGAAGCAAATGTTTTATTATTATTATTTTTAAAACACCGTTAGCATCTGGTTTAAT
GATTCTATAAAAACATAACGACTGGATCCGGAGACCACAGCCTCAGACTCATTGGCAAAA
TGGTATTTGGTCTTGCGTTCGCCCGCCCTGGGCTTCTCTACCCGTGAAGTTTCTGGAAAG
GGTCTGGGCAGAGAGACCTGGGGACACATAGCGGGCAGGTGAGTCTGTGACTCTGTATGA
ACCGAAGGACGGTGTTAGGAGTGGAACACCCTCCCCTTTCCCCCCGACCCCCGAGAGTTA
GTGCGGAAGCTGGAAGGGAGAAAAATGTACGGTGCAGTAGTTCCTAAATCCATCCATGGC
TCCGGGGAGGCAGAGCGAGGAACGAGGGGGGCTCCCAGGTGTGTATATACAACAGGGCTT
CTCAGGGTCTATACCTTCCCCAAGACGTCGGGGCGAACCAGGGTGGAGGAGGGGTGGAGG
CTGGGGGGGGGCATCAGGACTCCGAGGATCTTCTTCCAAGGTTCCCTGGCCACTCAGTTC
CCAATGCTTCCCAGGCAGCCAGAAAGAATGCAAAAAAAGAGCGAGGAGAGAGGGCGGGCG
GAGGGGGGCCTGGGAAGGCATTCGAGCAGCTGCAGCTTCCGGATGCGTCCACATCTGTGC
TCCATCTTCTGAAAAAGAAAGTCGCCCCCAAACCATACCACGCCTCTGCCACTGTCAGTT
CCACGCAAAGTCCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.741143
               

               
               199-313, - strand, RNAz p=0.9884

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.741143
               

               
               199-313, - strand, RNAz p=0.9884

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               186-298, - strand, RNAmicro p=0.968542

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-298, - strand, RNAmicro p=0.968542

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF227516, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF227516, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-331, gnl|bosTau2|chr7 (36654446-36654126)
               

               
               1-331, gnl|Hg17|chr5 (141672909-141673236)
               

               
               1-331, gnl|Mm7|chr18 (38965083-38965401)
               


               
               347-794, gnl|bosTau2|chr7 (36654129-36653702)
               

               
               347-794, gnl|Hg17|chr5 (141673233-141673738)
               

               
               347-794, gnl|Mm7|chr18 (38965398-38965837)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-331, gnl|bosTau2|chr7 (36654446-36654126)
               

               
               1-331, gnl|Hg17|chr5 (141672909-141673236)
               

               
               1-331, gnl|Mm7|chr18 (38965083-38965401)
               


               
               347-794, gnl|bosTau2|chr7 (36654129-36653702)
               

               
               347-794, gnl|Hg17|chr5 (141673233-141673738)
               

               
               347-794, gnl|Mm7|chr18 (38965398-38965837)

	1-119, - strand, RNAz p=0.741143
	199-313, - strand, RNAz p=0.9884

	1-331, gnl\|bosTau2\|chr7 (36654446-36654126)
	1-331, gnl\|Hg17\|chr5 (141672909-141673236)
	1-331, gnl\|Mm7\|chr18 (38965083-38965401)

	347-794, gnl\|bosTau2\|chr7 (36654129-36653702)
	347-794, gnl\|Hg17\|chr5 (141673233-141673738)
	347-794, gnl\|Mm7\|chr18 (38965398-38965837)