Non-Coding RNA Search

Mixn-0030h14

Sequence:


               
               GGAGTGTGGGGATTTAGTATATACCAGCCTGGACACTTTCCAGGTCTGAAATCTCTCAGG
ATAAATAGACTAAAAGAAGGGGGGGTAAGAGGAAGGAAAGAAGGAAGCCAGATTCCCTAA
TATCTTGTTTTGAGCAGCTGGGCCTGAGGCTGGCGGCCACAGGATGGCAGCGACCTGAAC
AACATTCACCCGTTTTGCTTAAGTCTGTTTCAATCTTGGTTTGTCACCTGTGAGCAGCAA
CCCCCCATACTTGGAAGTGTGCCTTTGGTCCTGTCCGTGTGCCCGCACGGTCCCCTAACT
CCCGGTGGTCCCCATCCGTCTCTCCCCTCCCCCACCGGGAAAGCGCACAACGCTCTCCTT
GCCATCCCCCACCCCCTCCGTGACGGGCGTCCAGCCCCGCACCTTCTGCAGCAGCAGCAC
GATGATGGGGATGAGACATGCCCGGCTCTGCTCCAGTGTGACCAGCGTCCGGGGCGAACG
GATGAAGAGCTTGCTATGGCCAAAGGCCACGTCCCCCTGCAGCCCGTGCTGCTCCAGGAG
GGCGCCCACGGCCGCCTTATCGGAGCCCAGCAGGTGGTTTGGCCACGTGTACTCACAGGT
CATCTTGTACCTGAGCAGGAAACGCGGATAGGGCTGGCGGGAAGCGAAGCCAGCTCTACG
GACCCGTACATTCTCCAGCAGCCCCAGGTATGCGACCTGGTGGCGACAGTGGCCCTCGTC
CAGCTTATCAGCCACCTTATCCTCATTGGGCTTGATGCAGCGGACATAGAAGGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGTGGGGATTTAGTATATACCAGCCTGGACACTTTCCAGGTCTGAAATCTCTCAGG
ATAAATAGACTAAAAGAAGGGGGGGTAAGAGGAAGGAAAGAAGGAAGCCAGATTCCCTAA
TATCTTGTTTTGAGCAGCTGGGCCTGAGGCTGGCGGCCACAGGATGGCAGCGACCTGAAC
AACATTCACCCGTTTTGCTTAAGTCTGTTTCAATCTTGGTTTGTCACCTGTGAGCAGCAA
CCCCCCATACTTGGAAGTGTGCCTTTGGTCCTGTCCGTGTGCCCGCACGGTCCCCTAACT
CCCGGTGGTCCCCATCCGTCTCTCCCCTCCCCCACCGGGAAAGCGCACAACGCTCTCCTT
GCCATCCCCCACCCCCTCCGTGACGGGCGTCCAGCCCCGCACCTTCTGCAGCAGCAGCAC
GATGATGGGGATGAGACATGCCCGGCTCTGCTCCAGTGTGACCAGCGTCCGGGGCGAACG
GATGAAGAGCTTGCTATGGCCAAAGGCCACGTCCCCCTGCAGCCCGTGCTGCTCCAGGAG
GGCGCCCACGGCCGCCTTATCGGAGCCCAGCAGGTGGTTTGGCCACGTGTACTCACAGGT
CATCTTGTACCTGAGCAGGAAACGCGGATAGGGCTGGCGGGAAGCGAAGCCAGCTCTACG
GACCCGTACATTCTCCAGCAGCCCCAGGTATGCGACCTGGTGGCGACAGTGGCCCTCGTC
CAGCTTATCAGCCACCTTATCCTCATTGGGCTTGATGCAGCGGACATAGAAGGGCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61831790|ref|XP_601257.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831790|ref|XP_601257.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-238, - strand, RNAz p=0.762351
               

               
               494-613, - strand, RNAz p=0.79923

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.762351
               

               
               494-613, - strand, RNAz p=0.79923

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               2-613, gnl|bosTau2|chr4 (43174521-43175127)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-613, gnl|bosTau2|chr4 (43174521-43175127)

	120-238, - strand, RNAz p=0.762351
	494-613, - strand, RNAz p=0.79923