Non-Coding RNA Search

Mixn-0031k12

Sequence:


               
               GAGATGCCCCTTGAAGGGCCCCATAGTGCTGTGGTTCACTCTGTGGGAGTGGCAATGGCA
GCCATCAGCCTCTTCTGCACTTTTAGAAGAACGGTGTCGCATGGCCGGGCTACAGGTGGA
CAGCCAAGTCCTCAATGTGGGGAAGACAGAGAATGTGTGTGGCTGGGGCTGCAGTCCCAC
CAGCCTTAGCACAGCTGTGCCCCAGGCTGCCCCTTGGGGGTGGTGGTGGTGGGGTGTCCT
GGAACTTAGGTCCCTTTAGTCACCACCTGGTCCTCTTTGTCCGGAAAAGAGATGATTCCT
GGTGACGACCCCTAAGAAAAAGGCATTGCGCAGGGGTGAGAAGGTGCGTGTTTGGTTTGG
TTCCTTAATTGGAAGGAGAAAAGGAAGCGTGGGAGAGGATTTCAAAACAAAACTGTCGGA
TTCTAGAAAAGAATATTAACGAAGGCTGAAATTTAGCAAGTCGATGCTCTCAGGTTCGCT
TGAATGTTTTCGATCTGGCCCAGTTTGTAAGCAGGACCTTTGGATAGAAAGAACAAAGGA
GGGGTCCCCCCAAGGTCATGGAGGGGTCCCCGGCTGGCACCTGTTTCAGTACATTGATTG
GTACTGAAGCCGATGGGTCTGTGGTCCTCTCTCTGCTCATTCATAGGATCAGCCTGTTAT
TATGTTTCCTGGATTGGAAGCACACATTTTTAAAAAGAAGCTATGCCAGAGACATTTTAA
TTTGAGAGAAGTGCCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGCCCCTTGAAGGGCCCCATAGTGCTGTGGTTCACTCTGTGGGAGTGGCAATGGCA
GCCATCAGCCTCTTCTGCACTTTTAGAAGAACGGTGTCGCATGGCCGGGCTACAGGTGGA
CAGCCAAGTCCTCAATGTGGGGAAGACAGAGAATGTGTGTGGCTGGGGCTGCAGTCCCAC
CAGCCTTAGCACAGCTGTGCCCCAGGCTGCCCCTTGGGGGTGGTGGTGGTGGGGTGTCCT
GGAACTTAGGTCCCTTTAGTCACCACCTGGTCCTCTTTGTCCGGAAAAGAGATGATTCCT
GGTGACGACCCCTAAGAAAAAGGCATTGCGCAGGGGTGAGAAGGTGCGTGTTTGGTTTGG
TTCCTTAATTGGAAGGAGAAAAGGAAGCGTGGGAGAGGATTTCAAAACAAAACTGTCGGA
TTCTAGAAAAGAATATTAACGAAGGCTGAAATTTAGCAAGTCGATGCTCTCAGGTTCGCT
TGAATGTTTTCGATCTGGCCCAGTTTGTAAGCAGGACCTTTGGATAGAAAGAACAAAGGA
GGGGTCCCCCCAAGGTCATGGAGGGGTCCCCGGCTGGCACCTGTTTCAGTACATTGATTG
GTACTGAAGCCGATGGGTCTGTGGTCCTCTCTCTGCTCATTCATAGGATCAGCCTGTTAT
TATGTTTCCTGGATTGGAAGCACACATTTTTAAAAAGAAGCTATGCCAGAGACATTTTAA
TTTGAGAGAAGTGCCAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               552-662, - strand, RNAz p=0.606933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-662, - strand, RNAz p=0.606933

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               333-738, gnl|bosTau2|chr4 (52865707-52866122)
               

               
               333-738, gnl|canFam2|chr14 (7759401-7759064)
               

               
               333-738, gnl|dasNov1|scaffold_1405 (130721-130400)
               

               
               333-738, gnl|hg17|chr7 (131585809-131586138)
               

               
               333-738, gnl|Hg17|chr7 (131586235-131585811)
               

               
               333-738, gnl|loxAfr1|scaffold_563 (105448-105094)
               

               
               333-738, gnl|mm7|chr6 (32385319-32385614)
               

               
               333-738, gnl|Mm7|chr6 (32385687-32385321)
               

               
               333-738, gnl|oryCun1|scaffold_198173 (123145-122815)
               

               
               333-738, gnl|panTro1|chr6 (134188127-134188456)
               

               
               333-738, gnl|rn3|chr4 (59836220-59836506)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-738, gnl|bosTau2|chr4 (52865707-52866122)
               

               
               333-738, gnl|canFam2|chr14 (7759401-7759064)
               

               
               333-738, gnl|dasNov1|scaffold_1405 (130721-130400)
               

               
               333-738, gnl|hg17|chr7 (131585809-131586138)
               

               
               333-738, gnl|Hg17|chr7 (131586235-131585811)
               

               
               333-738, gnl|loxAfr1|scaffold_563 (105448-105094)
               

               
               333-738, gnl|mm7|chr6 (32385319-32385614)
               

               
               333-738, gnl|Mm7|chr6 (32385687-32385321)
               

               
               333-738, gnl|oryCun1|scaffold_198173 (123145-122815)
               

               
               333-738, gnl|panTro1|chr6 (134188127-134188456)
               

               
               333-738, gnl|rn3|chr4 (59836220-59836506)

	333-738, gnl\|bosTau2\|chr4 (52865707-52866122)
	333-738, gnl\|canFam2\|chr14 (7759401-7759064)
	333-738, gnl\|dasNov1\|scaffold_1405 (130721-130400)
	333-738, gnl\|hg17\|chr7 (131585809-131586138)
	333-738, gnl\|Hg17\|chr7 (131586235-131585811)
	333-738, gnl\|loxAfr1\|scaffold_563 (105448-105094)
	333-738, gnl\|mm7\|chr6 (32385319-32385614)
	333-738, gnl\|Mm7\|chr6 (32385687-32385321)
	333-738, gnl\|oryCun1\|scaffold_198173 (123145-122815)
	333-738, gnl\|panTro1\|chr6 (134188127-134188456)
	333-738, gnl\|rn3\|chr4 (59836220-59836506)