Non-Coding RNA Search

Mixn-0033g01

Sequence:


               
               GCAAAAGAAAGAAAAACTAATCTGACCTTAAGGTTTTCAATGCCATGATGTTGTGAAGTC
ATTTCTCTGCCGCTTTTTTTGTTTGCTCTGCCAAATAGGTTGGCTAATCAGATGGCTTTT
GTTCATGCCCTGATCACTAATTTATTGCCTTTGCTCTTATTTCCAAATAGAAAGCTTTTG
AAAAGTTGTGTAATACCTGAACTGAATTGAAATTATTCTTAAAAATGTAGAAAAATGTTT
TGGAATTGGTCAAAACTGAATTTgaaacctgactcaactacttactagctgtgtgatcta
aggcatgttacttaacctcattgaacctcagtttcTTCTCTAATACAATAATTAATTTTC
AGGGTTTTCATAAGGATATTGTAAAGTGTATGTCATATGCACACTATAAATTACAGCTAT
CATTGTTAGTTCTTGGGACGTCCACCGCGTGACAGAAACAGCAGCATGCCCTTGTGGCTG
GGAGGACTTCATGGATCCAACAGCAACCTGAAGAAATCCTACTCGGATGGATATAATACA
ACCTGCTAAGTGTCCTAGCACTTATCAGGTTGTATTATCATTGTCCGTGTCTATGGCTCT
CGTCTACCAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAAGAAAGAAAAACTAATCTGACCTTAAGGTTTTCAATGCCATGATGTTGTGAAGTC
ATTTCTCTGCCGCTTTTTTTGTTTGCTCTGCCAAATAGGTTGGCTAATCAGATGGCTTTT
GTTCATGCCCTGATCACTAATTTATTGCCTTTGCTCTTATTTCCAAATAGAAAGCTTTTG
AAAAGTTGTGTAATACCTGAACTGAATTGAAATTATTCTTAAAAATGTAGAAAAATGTTT
TGGAATTGGTCAAAACTGAATTTgaaacctgactcaactacttactagctgtgtgatcta
aggcatgttacttaacctcattgaacctcagtttcTTCTCTAATACAATAATTAATTTTC
AGGGTTTTCATAAGGATATTGTAAAGTGTATGTCATATGCACACTATAAATTACAGCTAT
CATTGTTAGTTCTTGGGACGTCCACCGCGTGACAGAAACAGCAGCATGCCCTTGTGGCTG
GGAGGACTTCATGGATCCAACAGCAACCTGAAGAAATCCTACTCGGATGGATATAATACA
ACCTGCTAAGTGTCCTAGCACTTATCAGGTTGTATTATCATTGTCCGTGTCTATGGCTCT
CGTCTACCAGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               471-613, + strand, RNAz p=0.973822

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-613, + strand, RNAz p=0.973822

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               528-631, - strand, RNAmicro p=0.999846
               

               
               538-626, + strand, RNAmicro p=0.998904

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               528-631, - strand, RNAmicro p=0.999846
               

               
               538-626, + strand, RNAmicro p=0.998904

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               474-609, 610133 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB433730.1|), 
blast E-value=1.4013e-45, identity=92.65% 
               

               
               474-613, 693578 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442769.1|), 
blast E-value=0, identity=100% 
               

               
               474-613, LB02529.CR_E15 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876043.1|), 
blast E-value=0, identity=100% 
               

               
               474-613, LB02543.CR_J07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE343442.1|), 
blast E-value=0, identity=100% 
               

               
               540-613, LB02991.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE370712.1|), 
blast E-value=1e-32, identity=100% 
               

               
               518-613, yr55h01.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(gb|H63707.1|), blast E-value=8e-31, identity=94.9%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               474-609, 610133 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB433730.1|), 
blast E-value=1.4013e-45, identity=92.65% 
               

               
               474-613, 693578 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB442769.1|), 
blast E-value=0, identity=100% 
               

               
               474-613, LB02529.CR_E15 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876043.1|), 
blast E-value=0, identity=100% 
               

               
               474-613, LB02543.CR_J07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE343442.1|), 
blast E-value=0, identity=100% 
               

               
               540-613, LB02991.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE370712.1|), 
blast E-value=1e-32, identity=100% 
               

               
               518-613, yr55h01.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(gb|H63707.1|), blast E-value=8e-31, identity=94.9%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-613, gnl|bosTau2|chr24 (6039414-6040015)
               

               
               1-613, gnl|Hg17|chrX (73221984-73221382)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr24 (6039414-6040015)
               

               
               1-613, gnl|Hg17|chrX (73221984-73221382)

	528-631, - strand, RNAmicro p=0.999846
	538-626, + strand, RNAmicro p=0.998904

	474-609, 610133 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB433730.1\|), blast E-value=1.4013e-45, identity=92.65%
	474-613, 693578 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB442769.1\|), blast E-value=0, identity=100%
	474-613, LB02529.CR_E15 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV876043.1\|), blast E-value=0, identity=100%
	474-613, LB02543.CR_J07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE343442.1\|), blast E-value=0, identity=100%
	540-613, LB02991.CR_K15 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE370712.1\|), blast E-value=1e-32, identity=100%
	518-613, yr55h01.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (gb\|H63707.1\|), blast E-value=8e-31, identity=94.9%

	1-613, gnl\|bosTau2\|chr24 (6039414-6040015)
	1-613, gnl\|Hg17\|chrX (73221984-73221382)