Non-Coding RNA Search

Mixn-0034k06

Sequence:


               
               GGCAACTCGAGTTCAAAATGCATGGGACCTCTAGTCCTGTGGAATTTCAACAAGGGATGG
GATCGGGTTTGGATGGACATGGCAGCTTTTGTCGCGGAGAGAAAGCCCAGACTTGAGAAA
CAAAGTTAACATTTATTGACTGCCTACTAAGTGCTAAATCCTTCCGCATTTGTTCTCACT
TTGAAGCATCAAGCTTGTCCCTCCCAGGTCTCCAGTCTTGGTCTGGCTCGGAAAAGGGTC
CAGGCTTTGAAGAGCTTTTAAGTTATCCTTTGACCCTGGGTGGCCAGGGAAGGTCCCCAG
GGGTGTCCAGCCAAATACACATCCCAGGTAAACTGATTAACCGTGGATGTGGCGCCGGGG
AAGGGGCCGTGGCTGTCAGTTTCCCCCTCCCCCTCATGGGGGAGCCAGACGGCACCCCCG
GGGGCGGGGGAGGGGGGGCGCTCTGCCTTCCTGCCTGGAGCCTCTGGGGAGGACCTGGAG
AGATAGCTCGGCCACATCTCCATACAATGCAGCTGGAGGTGGGCGTGTTGGGGGTGAGGC
GTTCAGGCCCAGCATTCTTAGAACTCTCCTGAGCTCTCTCCAGAACTCTCTCTAGAACTT
CTGTTTTAAAATAGGGAGGAATGGTCCACGTAGTTTGACTTTTTTTACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACTCGAGTTCAAAATGCATGGGACCTCTAGTCCTGTGGAATTTCAACAAGGGATGG
GATCGGGTTTGGATGGACATGGCAGCTTTTGTCGCGGAGAGAAAGCCCAGACTTGAGAAA
CAAAGTTAACATTTATTGACTGCCTACTAAGTGCTAAATCCTTCCGCATTTGTTCTCACT
TTGAAGCATCAAGCTTGTCCCTCCCAGGTCTCCAGTCTTGGTCTGGCTCGGAAAAGGGTC
CAGGCTTTGAAGAGCTTTTAAGTTATCCTTTGACCCTGGGTGGCCAGGGAAGGTCCCCAG
GGGTGTCCAGCCAAATACACATCCCAGGTAAACTGATTAACCGTGGATGTGGCGCCGGGG
AAGGGGCCGTGGCTGTCAGTTTCCCCCTCCCCCTCATGGGGGAGCCAGACGGCACCCCCG
GGGGCGGGGGAGGGGGGGCGCTCTGCCTTCCTGCCTGGAGCCTCTGGGGAGGACCTGGAG
AGATAGCTCGGCCACATCTCCATACAATGCAGCTGGAGGTGGGCGTGTTGGGGGTGAGGC
GTTCAGGCCCAGCATTCTTAGAACTCTCCTGAGCTCTCTCCAGAACTCTCTCTAGAACTT
CTGTTTTAAAATAGGGAGGAATGGTCCACGTAGTTTGACTTTTTTTACCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-651, - strand, RNAz p=0.999903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-651, - strand, RNAz p=0.999903

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               391-491, + strand, RNAmicro p=0.996276
               

               
               541-605, + strand, RNAmicro p=0.95265

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               391-491, + strand, RNAmicro p=0.996276
               

               
               541-605, + strand, RNAmicro p=0.95265

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-356, gnl|bosTau2|chr8 (2331095-2330753)
               

               
               1-356, gnl|canFam2|chr25 (29161991-29161519)
               

               
               1-356, gnl|echTel1|scaffold_307334 (3534-3030)
               

               
               1-356, gnl|hg17|chr8 (11604746-11605226)
               

               
               1-356, gnl|Hg17|chr8 (11604789-11605133)
               

               
               1-356, gnl|loxAfr1|scaffold_1059 (170064-170547)
               

               
               1-356, gnl|mm7|chr14 (58103714-58103312)
               

               
               1-356, gnl|oryCun1|scaffold_176566 (18819-19210)
               

               
               1-356, gnl|panTro1|chr7 (12261540-12262020)
               

               
               1-356, gnl|rheMac2|chr8 (9031756-9031276)
               

               
               1-356, gnl|rn3|chr15 (42529876-42529486)
               


               
               369-651, gnl|bosTau2|chr8 (2330760-2330482)
               

               
               369-651, gnl|Hg17|chr8 (11605126-11605377)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-356, gnl|bosTau2|chr8 (2331095-2330753)
               

               
               1-356, gnl|canFam2|chr25 (29161991-29161519)
               

               
               1-356, gnl|echTel1|scaffold_307334 (3534-3030)
               

               
               1-356, gnl|hg17|chr8 (11604746-11605226)
               

               
               1-356, gnl|Hg17|chr8 (11604789-11605133)
               

               
               1-356, gnl|loxAfr1|scaffold_1059 (170064-170547)
               

               
               1-356, gnl|mm7|chr14 (58103714-58103312)
               

               
               1-356, gnl|oryCun1|scaffold_176566 (18819-19210)
               

               
               1-356, gnl|panTro1|chr7 (12261540-12262020)
               

               
               1-356, gnl|rheMac2|chr8 (9031756-9031276)
               

               
               1-356, gnl|rn3|chr15 (42529876-42529486)
               


               
               369-651, gnl|bosTau2|chr8 (2330760-2330482)
               

               
               369-651, gnl|Hg17|chr8 (11605126-11605377)

	391-491, + strand, RNAmicro p=0.996276
	541-605, + strand, RNAmicro p=0.95265

	1-356, gnl\|bosTau2\|chr8 (2331095-2330753)
	1-356, gnl\|canFam2\|chr25 (29161991-29161519)
	1-356, gnl\|echTel1\|scaffold_307334 (3534-3030)
	1-356, gnl\|hg17\|chr8 (11604746-11605226)
	1-356, gnl\|Hg17\|chr8 (11604789-11605133)
	1-356, gnl\|loxAfr1\|scaffold_1059 (170064-170547)
	1-356, gnl\|mm7\|chr14 (58103714-58103312)
	1-356, gnl\|oryCun1\|scaffold_176566 (18819-19210)
	1-356, gnl\|panTro1\|chr7 (12261540-12262020)
	1-356, gnl\|rheMac2\|chr8 (9031756-9031276)
	1-356, gnl\|rn3\|chr15 (42529876-42529486)

	369-651, gnl\|bosTau2\|chr8 (2330760-2330482)
	369-651, gnl\|Hg17\|chr8 (11605126-11605377)