Non-Coding RNA Search

Mixn-0037m16

Sequence:


               
               GGGACTGTGATGCTGCTGGCCTTGTCGGTGGGGTTGGGGTGTAGGGAGCCACCCCCCTCG
GGCCCCGGGACAGAGGCCTTGGTCCGTCTAAAGAGCAGCGAGGCGTTGCCATGCAAGAAG
GAGGCCAGCTGCTTGGCGTCCTCGGGTACAGCCCGCGAGCAGGCCACTAGGCGGTCCAGG
TCTTCGGGAGTGGCCCCCAGGCCTCCCCAGCCACTGTCAAGGGCCTGACCGTGGGCCACC
AGCGTCTGGTACACGTCCTCCATCTTCTGCAGTTGCCGGCTAAGCTTGGCATGCAGCGTG
CGGTCGGAAGTGTGGGCAGCATTGCCCACAGCGCTGCGGGCAAACTCCAGCAGCTCGTGG
ACGGCCCCGTGGACAGCAGCCACGGCAGCCCGCAGGTCCTGTGCCGGAGGCTCCTGAGGC
TCAGGGGTGCTGCGCCAGCCCCCACACCCGCCTGCACTGCCTGCCAGGTCCAAGAGGTGG
GCCACGGTGGCACTCACGCCCTGCTGCAGCCGTGCCAGGGCCTCCACGGCCACCTCCAGC
TCCAGGGGCTCACGGCCGGGCACTGCCGCCTCCAGGGAGGAGGCCGACAGGCTGCTGCGC
GTGCTGCCCGTGCTGGAGGCCGACAGGCGTTTGGCGTCACCTGGGGCCTCGCGCTCAGCA
GGCGGGGGCACGGCGTACACGCCGTCGTCGGCTCCGCCACCGTCGGCTGCCTCGGGAGGA
AGAACCCGCTCTCGGGGTACGTCGTAGAGGGTGCCAGGGGCCAGCCGCCGCAAGCCGGGG
GGCACATCGTAGAAGTCAGGAGCCGGGGGCGGCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACTGTGATGCTGCTGGCCTTGTCGGTGGGGTTGGGGTGTAGGGAGCCACCCCCCTCG
GGCCCCGGGACAGAGGCCTTGGTCCGTCTAAAGAGCAGCGAGGCGTTGCCATGCAAGAAG
GAGGCCAGCTGCTTGGCGTCCTCGGGTACAGCCCGCGAGCAGGCCACTAGGCGGTCCAGG
TCTTCGGGAGTGGCCCCCAGGCCTCCCCAGCCACTGTCAAGGGCCTGACCGTGGGCCACC
AGCGTCTGGTACACGTCCTCCATCTTCTGCAGTTGCCGGCTAAGCTTGGCATGCAGCGTG
CGGTCGGAAGTGTGGGCAGCATTGCCCACAGCGCTGCGGGCAAACTCCAGCAGCTCGTGG
ACGGCCCCGTGGACAGCAGCCACGGCAGCCCGCAGGTCCTGTGCCGGAGGCTCCTGAGGC
TCAGGGGTGCTGCGCCAGCCCCCACACCCGCCTGCACTGCCTGCCAGGTCCAAGAGGTGG
GCCACGGTGGCACTCACGCCCTGCTGCAGCCGTGCCAGGGCCTCCACGGCCACCTCCAGC
TCCAGGGGCTCACGGCCGGGCACTGCCGCCTCCAGGGAGGAGGCCGACAGGCTGCTGCGC
GTGCTGCCCGTGCTGGAGGCCGACAGGCGTTTGGCGTCACCTGGGGCCTCGCGCTCAGCA
GGCGGGGGCACGGCGTACACGCCGTCGTCGGCTCCGCCACCGTCGGCTGCCTCGGGAGGA
AGAACCCGCTCTCGGGGTACGTCGTAGAGGGTGCCAGGGGCCAGCCGCCGCAAGCCGGGG
GGCACATCGTAGAAGTCAGGAGCCGGGGGCGGCACAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62738876|pdb|1Z23|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62738876|pdb|1Z23|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.886274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.886274

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr18 (5878236-5879049)
               

               
               1-815, gnl|Hg17|chr16 (73826395-73827208)
               

               
               1-815, gnl|Mm7|chr8 (110313491-110314304)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr18 (5878236-5879049)
               

               
               1-815, gnl|Hg17|chr16 (73826395-73827208)
               

               
               1-815, gnl|Mm7|chr8 (110313491-110314304)

	1-815, gnl\|bosTau2\|chr18 (5878236-5879049)
	1-815, gnl\|Hg17\|chr16 (73826395-73827208)
	1-815, gnl\|Mm7\|chr8 (110313491-110314304)