Non-Coding RNA Search

Mixn-0038b14

Sequence:


               
               TCGGGATCTGGAGTCCCAGCTGTCCTCAAAGGCTGTGTTTCCTGTTTTCACAGGCAGCTC
CTGCCCGGGCATTTACCAGGAAACAGTTAAAAATGGCTTCTGAAATGGGCCGAGACGCAG
ACGGCTTGTTCTTTTAATAAGAGCCAGGACTGAGTGAGTCCTGACTACGCACGGGCATCG
GGCCAAGCAGTTTACCTGAAATATTTCCTTCGGTCGCCAGGCCCGGGAGGCAGTTTCTAT
TATTGCCTTCATTGTACAGGTGATAAGATCGAGGCCCAGAGTCGGTAACTTTCCCAAAGG
GCCGCCACCAACGCATGATACTCGCTTCTTCCCCCCAAACGTGGACACACCTGCTCTCTT
ATCGGCCGCTGCCTGGTCTGGCCAAGGGCCCCAAACCAAAACACGGTGTTGGCTTAGTCA
CTGGCCGTTATCACCCCAAGGAGCCCAAGCGATGTCCTGCGGAGGAAGCCCGGGGGGCTC
TGTGGGAGCTGGGCGTCCAGTGCCCAGTCGGGCATTTCTTGGGCACCTGTGCATGTCTAA
TCGTGTTTTCTGTGTCAGAAGGGCGGGCTGTGCTCATCAGAAGCCCATTAGGACGCTGGC
CAAGGGGTTGTTTGTGATTTCAGGGCCATTGAGCAAAATACAGGGTGAGGGTTTTGGCTC
CGGGTGGCCCCCCGCGGCATCGGGGGCGGNAGTCGCCCCGCCCCACTCCTCTGTTTTCCT
CAAGCTTCTGTTTATTTTACTCCTGCAGACAGAAGCCAAAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGGATCTGGAGTCCCAGCTGTCCTCAAAGGCTGTGTTTCCTGTTTTCACAGGCAGCTC
CTGCCCGGGCATTTACCAGGAAACAGTTAAAAATGGCTTCTGAAATGGGCCGAGACGCAG
ACGGCTTGTTCTTTTAATAAGAGCCAGGACTGAGTGAGTCCTGACTACGCACGGGCATCG
GGCCAAGCAGTTTACCTGAAATATTTCCTTCGGTCGCCAGGCCCGGGAGGCAGTTTCTAT
TATTGCCTTCATTGTACAGGTGATAAGATCGAGGCCCAGAGTCGGTAACTTTCCCAAAGG
GCCGCCACCAACGCATGATACTCGCTTCTTCCCCCCAAACGTGGACACACCTGCTCTCTT
ATCGGCCGCTGCCTGGTCTGGCCAAGGGCCCCAAACCAAAACACGGTGTTGGCTTAGTCA
CTGGCCGTTATCACCCCAAGGAGCCCAAGCGATGTCCTGCGGAGGAAGCCCGGGGGGCTC
TGTGGGAGCTGGGCGTCCAGTGCCCAGTCGGGCATTTCTTGGGCACCTGTGCATGTCTAA
TCGTGTTTTCTGTGTCAGAAGGGCGGGCTGTGCTCATCAGAAGCCCATTAGGACGCTGGC
CAAGGGGTTGTTTGTGATTTCAGGGCCATTGAGCAAAATACAGGGTGAGGGTTTTGGCTC
CGGGTGGCCCCCCGCGGCATCGGGGGCGGNAGTCGCCCCGCCCCACTCCTCTGTTTTCCT
CAAGCTTCTGTTTATTTTACTCCTGCAGACAGAAGCCAAAGTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               665-761, - strand, RNAz p=0.616648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-761, - strand, RNAz p=0.616648

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-299, gnl|bosTau2|chr19 (26458429-26458725)
               

               
               7-299, gnl|Hg17|chr17 (17285404-17285094)
               


               
               351-761, gnl|bosTau2|chr19 (26458806-26459239)
               

               
               351-761, gnl|Hg17|chr17 (17284931-17284498)
               

               
               351-761, gnl|Mm7|chr11 (59990469-59990070)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-299, gnl|bosTau2|chr19 (26458429-26458725)
               

               
               7-299, gnl|Hg17|chr17 (17285404-17285094)
               


               
               351-761, gnl|bosTau2|chr19 (26458806-26459239)
               

               
               351-761, gnl|Hg17|chr17 (17284931-17284498)
               

               
               351-761, gnl|Mm7|chr11 (59990469-59990070)

	7-299, gnl\|bosTau2\|chr19 (26458429-26458725)
	7-299, gnl\|Hg17\|chr17 (17285404-17285094)

	351-761, gnl\|bosTau2\|chr19 (26458806-26459239)
	351-761, gnl\|Hg17\|chr17 (17284931-17284498)
	351-761, gnl\|Mm7\|chr11 (59990469-59990070)