Non-Coding RNA Search

Mixn-0038c20

Sequence:


               
               CAGAATATAAAAAAGCCACCTACAAATCATGCCCATTGACAAAATCTGAGACTATTTAAC
GAAATAATAAGAGAGAGAGAAACTTGTACTGTTGTCAGACATTGGACTATAGATAGAACA
CAACTATGATCCCTAAGAGAGGCGGAGAGGAAACTACACACAAAGGAGTCCTATAATTTC
CTCAACTTTCTGCTTGGGGGCACTTTATAGGCCATAGCACAGGGACGGAGAGCCCAGGCA
GAGTTCAGCAGACTCTGAGTGGAAGGAACAGAAATCTGAGTTCATGATTCAGAGGTGTCT
GGAATTTGCAGGACAGGGTGTCAGAGAGGAAAGAGCTGGAAAGAAAAGGAGCTCAGGCAA
ATTGCTAAGGTGTCTCCTTGGGTGCATTGCTAAATACTAAACTGAGAATGTGTAGGATGG
GAATCTACATGGCAGAATAAAGAACTCTTTGGGAGCTGTAAGGTTAATAATTCCCAGAGC
TTACACAGGGCCAAGAGAAATTGGAGTTCTAACCAGTCTGAGTGGAGAGACCTCATAAGG
GGCAAAGCTTACTAGTAGGGTTAAAATGGCCATAGATTAAGCTTCCTACGGCCCACTTTA
ACAAAGTTTAATTTTAAAAACCCCCAAAAGATCAAACGAATATGCATATAACTTAACTGT
TAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATATAAAAAAGCCACCTACAAATCATGCCCATTGACAAAATCTGAGACTATTTAAC
GAAATAATAAGAGAGAGAGAAACTTGTACTGTTGTCAGACATTGGACTATAGATAGAACA
CAACTATGATCCCTAAGAGAGGCGGAGAGGAAACTACACACAAAGGAGTCCTATAATTTC
CTCAACTTTCTGCTTGGGGGCACTTTATAGGCCATAGCACAGGGACGGAGAGCCCAGGCA
GAGTTCAGCAGACTCTGAGTGGAAGGAACAGAAATCTGAGTTCATGATTCAGAGGTGTCT
GGAATTTGCAGGACAGGGTGTCAGAGAGGAAAGAGCTGGAAAGAAAAGGAGCTCAGGCAA
ATTGCTAAGGTGTCTCCTTGGGTGCATTGCTAAATACTAAACTGAGAATGTGTAGGATGG
GAATCTACATGGCAGAATAAAGAACTCTTTGGGAGCTGTAAGGTTAATAATTCCCAGAGC
TTACACAGGGCCAAGAGAAATTGGAGTTCTAACCAGTCTGAGTGGAGAGACCTCATAAGG
GGCAAAGCTTACTAGTAGGGTTAAAATGGCCATAGATTAAGCTTCCTACGGCCCACTTTA
ACAAAGTTTAATTTTAAAAACCCCCAAAAGATCAAACGAATATGCATATAACTTAACTGT
TAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               240-358, - strand, RNAz p=0.658079
               

               
               518-637, - strand, RNAz p=0.998676

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, - strand, RNAz p=0.658079
               

               
               518-637, - strand, RNAz p=0.998676

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-663, gnl|bosTau2|chr3 (24711347-24710726)
               

               
               11-663, gnl|Hg17|chr1 (113807676-113808336)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-663, gnl|bosTau2|chr3 (24711347-24710726)
               

               
               11-663, gnl|Hg17|chr1 (113807676-113808336)

	240-358, - strand, RNAz p=0.658079
	518-637, - strand, RNAz p=0.998676

	11-663, gnl\|bosTau2\|chr3 (24711347-24710726)
	11-663, gnl\|Hg17\|chr1 (113807676-113808336)