Non-Coding RNA Search

Mus1-POSM0100006_A01

Sequence:


               
               CCACGCGTCCGACACCATCTGGCTGGGCCCGGCCCCCCGCCCACCTTCCTTGCGACCACC
AACACACAGGAACTCCGCCTGAGAGAGAGGACGCCCTGCCCAGGCCTGGCGGAGGGGGAG
GGGCGAGGCCTAGGGGACAGGGGAGACCACCCCCAGAGCTTGCCTGAGGGCCAAGCCGGC
CCAAGCCAGGCACTCCGGGCCCCCTCCCCAGGGTCAGCCGCGGCCCAGGAGGAGGGGGAG
GGCCGTCAGGCAGCCCCCAACCTGCTCTCAGCTTGTGCCTTGTAAATAAATGTACAGGTT
GGAAGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGACACCATCTGGCTGGGCCCGGCCCCCCGCCCACCTTCCTTGCGACCACC
AACACACAGGAACTCCGCCTGAGAGAGAGGACGCCCTGCCCAGGCCTGGCGGAGGGGGAG
GGGCGAGGCCTAGGGGACAGGGGAGACCACCCCCAGAGCTTGCCTGAGGGCCAAGCCGGC
CCAAGCCAGGCACTCCGGGCCCCCTCCCCAGGGTCAGCCGCGGCCCAGGAGGAGGGGGAG
GGCCGTCAGGCAGCCCCCAACCTGCTCTCAGCTTGTGCCTTGTAAATAAATGTACAGGTT
GGAAGTGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               211-309, - strand, RNAz p=0.914952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-309, - strand, RNAz p=0.914952

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               12-309, gnl|bosTau2|chr13 (44041566-44041886)
               

               
               12-309, gnl|canFam2|chr24 (24266903-24267366)
               

               
               12-309, gnl|hg17|chr20 (29885726-29886188)
               

               
               12-309, gnl|Hg17|chr20 (29885836-29886154)
               

               
               12-309, gnl|mm7|chr2 (152663446-152663917)
               

               
               12-309, gnl|Mm7|chr2 (152663536-152663883)
               

               
               12-309, gnl|oryCun1|scaffold_144195 (698-1125)
               

               
               12-309, gnl|panTro1|chr21 (31584735-31585197)
               

               
               12-309, gnl|rheMac2|chr10 (32737528-32737065)
               

               
               12-309, gnl|rn3|chr3 (143169047-143169485)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-309, gnl|bosTau2|chr13 (44041566-44041886)
               

               
               12-309, gnl|canFam2|chr24 (24266903-24267366)
               

               
               12-309, gnl|hg17|chr20 (29885726-29886188)
               

               
               12-309, gnl|Hg17|chr20 (29885836-29886154)
               

               
               12-309, gnl|mm7|chr2 (152663446-152663917)
               

               
               12-309, gnl|Mm7|chr2 (152663536-152663883)
               

               
               12-309, gnl|oryCun1|scaffold_144195 (698-1125)
               

               
               12-309, gnl|panTro1|chr21 (31584735-31585197)
               

               
               12-309, gnl|rheMac2|chr10 (32737528-32737065)
               

               
               12-309, gnl|rn3|chr3 (143169047-143169485)

	12-309, gnl\|bosTau2\|chr13 (44041566-44041886)
	12-309, gnl\|canFam2\|chr24 (24266903-24267366)
	12-309, gnl\|hg17\|chr20 (29885726-29886188)
	12-309, gnl\|Hg17\|chr20 (29885836-29886154)
	12-309, gnl\|mm7\|chr2 (152663446-152663917)
	12-309, gnl\|Mm7\|chr2 (152663536-152663883)
	12-309, gnl\|oryCun1\|scaffold_144195 (698-1125)
	12-309, gnl\|panTro1\|chr21 (31584735-31585197)
	12-309, gnl\|rheMac2\|chr10 (32737528-32737065)
	12-309, gnl\|rn3\|chr3 (143169047-143169485)