Non-Coding RNA Search

Mus1-POSM0100008_B08

Sequence:


               
               AAATTCCCGGGTCGACCCACGCGTCCGCTCTGTATTTATCACTGGCACAAATGATGTGTT
TGGACTCCCTGAGACAAAATTAGGGAGTCAAATATGGACCTAAAAAGNTCAACTCTNGGA
CCCCCCCCCCCCCCCCCGTACAAACTCTCTTTCACCAGGCGCCTCCTCCTCTTCGCTCCC
GTGCTAGCTCGTTCTCGGCTTGTCTGCAGGCCCCTTCCCCCGCCCAGGCCTTGGGGCTCG
TCCCTGAACCTCGCTTCAGACACCACAGATCTCCCTCCAAACGAGGACTTGGCCTCCCAC
NCCCCTCGGCGCCCCCCCACCCCCCACCCCTGCCCAGAAAGCCGGCTCCCGGGGCCCGGG
GGGCTCTGCTCCGGGGCCTCAGGGCCCGGCCTGGCAGCCGGGGAGGGCGGGAGGCCCAAG
GAGGGCGCGTCGTGGCCCCACAGCAACCCCCAGGGCCTCCCCGCAGCCCCCGCCTGGCCC
CTCTGCCCCAGCAAATGCCCAGCACGGGCGAATTGTATTTAAAGAATCCTGGGGGTCATA
TGGCATATTACAAACTGTGACCGTCTCTGTGTGAATATTTTTAGCTGTATTTGTGGTCTC
TGTATTTATATTTATGTTTAGCATCGTCCGTGTTCCAATCCCATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCCCGGGTCGACCCACGCGTCCGCTCTGTATTTATCACTGGCACAAATGATGTGTT
TGGACTCCCTGAGACAAAATTAGGGAGTCAAATATGGACCTAAAAAGNTCAACTCTNGGA
CCCCCCCCCCCCCCCCCGTACAAACTCTCTTTCACCAGGCGCCTCCTCCTCTTCGCTCCC
GTGCTAGCTCGTTCTCGGCTTGTCTGCAGGCCCCTTCCCCCGCCCAGGCCTTGGGGCTCG
TCCCTGAACCTCGCTTCAGACACCACAGATCTCCCTCCAAACGAGGACTTGGCCTCCCAC
NCCCCTCGGCGCCCCCCCACCCCCCACCCCTGCCCAGAAAGCCGGCTCCCGGGGCCCGGG
GGGCTCTGCTCCGGGGCCTCAGGGCCCGGCCTGGCAGCCGGGGAGGGCGGGAGGCCCAAG
GAGGGCGCGTCGTGGCCCCACAGCAACCCCCAGGGCCTCCCCGCAGCCCCCGCCTGGCCC
CTCTGCCCCAGCAAATGCCCAGCACGGGCGAATTGTATTTAAAGAATCCTGGGGGTCATA
TGGCATATTACAAACTGTGACCGTCTCTGTGTGAATATTTTTAGCTGTATTTGTGGTCTC
TGTATTTATATTTATGTTTAGCATCGTCCGTGTTCCAATCCCATCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               28-146, + strand, RNAz p=0.833448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-146, + strand, RNAz p=0.833448

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004503, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004503, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-647, gnl|bosTau2|chr5 (16754202-16753588)
               

               
               28-647, gnl|Hg17|chr12 (52710084-52710692)
               

               
               28-647, gnl|Mm7|chr15 (102997259-102997854)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-647, gnl|bosTau2|chr5 (16754202-16753588)
               

               
               28-647, gnl|Hg17|chr12 (52710084-52710692)
               

               
               28-647, gnl|Mm7|chr15 (102997259-102997854)

	28-647, gnl\|bosTau2\|chr5 (16754202-16753588)
	28-647, gnl\|Hg17\|chr12 (52710084-52710692)
	28-647, gnl\|Mm7\|chr15 (102997259-102997854)