Non-Coding RNA Search

OvF4-UMC-p4mm3-006-e08

Sequence:


               
               CAGCGGGCTCACCCGCAGCCAGCTCCACCCCCGCCTGGGCCTCCAGCTCAGCCTTGGACC
CAGCCAGGGGGCCCCTGAGGACATCACCCCCTGCCCCGTCCATGCTCAGCACGCGGGCAT
GAGTTTTGGCGCTGGCAGTACTAGGCGTCCGCTGGGTCCCATAGGGCCGCTTGGGGGGCA
CAGCAGTCCCCTCCTCAGCCCCGTGGGGCGCCCGTCGTTTCCGGGGTCCCCCCGCTGCAC
CCCGAGAGCTCTCGGGAGAGTAGCAGGAAGTGGAGGAAGAGCTGTCGGTGCTATAGCGAC
GCTGGGACCGGAGGCTGGAAGCCGGGCTCAGTTCACTGCCCTCGCTGGTGTCGTCGTCCT
CAAAAAAGCCCCCGCCTTCGAGCAGTGGCCGCCGAGGGGCACGGCCAGCCGGGGAGTGTC
TTCGCAGGGGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGGGCTCACCCGCAGCCAGCTCCACCCCCGCCTGGGCCTCCAGCTCAGCCTTGGACC
CAGCCAGGGGGCCCCTGAGGACATCACCCCCTGCCCCGTCCATGCTCAGCACGCGGGCAT
GAGTTTTGGCGCTGGCAGTACTAGGCGTCCGCTGGGTCCCATAGGGCCGCTTGGGGGGCA
CAGCAGTCCCCTCCTCAGCCCCGTGGGGCGCCCGTCGTTTCCGGGGTCCCCCCGCTGCAC
CCCGAGAGCTCTCGGGAGAGTAGCAGGAAGTGGAGGAAGAGCTGTCGGTGCTATAGCGAC
GCTGGGACCGGAGGCTGGAAGCCGGGCTCAGTTCACTGCCCTCGCTGGTGTCGTCGTCCT
CAAAAAAGCCCCCGCCTTCGAGCAGTGGCCGCCGAGGGGCACGGCCAGCCGGGGAGTGTC
TTCGCAGGGGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-239, - strand, RNAz p=0.698305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.698305

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-437, gnl|bosTau2|chr29 (37834052-37834491)
               

               
               1-437, gnl|Hg17|chr11 (65143027-65142591)
               

               
               1-437, gnl|Mm7|chr19 (5579985-5580421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-437, gnl|bosTau2|chr29 (37834052-37834491)
               

               
               1-437, gnl|Hg17|chr11 (65143027-65142591)
               

               
               1-437, gnl|Mm7|chr19 (5579985-5580421)

	1-437, gnl\|bosTau2\|chr29 (37834052-37834491)
	1-437, gnl\|Hg17\|chr11 (65143027-65142591)
	1-437, gnl\|Mm7\|chr19 (5579985-5580421)