Non-Coding RNA Search

OvF4-UMC-p4mm3-012-g08

Sequence:


               
               CGACTGGGTCAGTAGGGAAATACCGTGTGTGTCCTAGAAGCAAAGGACCTGACTTCGATG
TTTGGGGGACATGTTACCACAAAATGGGGCTGTTCATTGAAAAGTAATGAACAGCTGGGA
AATAAGCATCTCTCCTATGTGGGCTGTTAAGCATAGAATTTCCCTGAAAATTACCTCACA
AAGAGGCAATCACTTTCCAAGGCCTGCTATGACACATCTTGTGTTTTCTGTGTCTCTGGC
CCAGGTGGGAGACTGGATTAAAGATCCTGGACAGCAGCCTTTCCTGACTGTTCAAAGTTT
AGAACCCTGGACCTCCGACTGGCATTGCCCACCATGGACCAGGGCTTGACAGAAGTGGCA
TCCACCCTAAGTGGATGACTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTGGGTCAGTAGGGAAATACCGTGTGTGTCCTAGAAGCAAAGGACCTGACTTCGATG
TTTGGGGGACATGTTACCACAAAATGGGGCTGTTCATTGAAAAGTAATGAACAGCTGGGA
AATAAGCATCTCTCCTATGTGGGCTGTTAAGCATAGAATTTCCCTGAAAATTACCTCACA
AAGAGGCAATCACTTTCCAAGGCCTGCTATGACACATCTTGTGTTTTCTGTGTCTCTGGC
CCAGGTGGGAGACTGGATTAAAGATCCTGGACAGCAGCCTTTCCTGACTGTTCAAAGTTT
AGAACCCTGGACCTCCGACTGGCATTGCCCACCATGGACCAGGGCTTGACAGAAGTGGCA
TCCACCCTAAGTGGATGACTTTCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               28-135, - strand, RNAz p=0.898472
               

               
               35-191, + strand, RNAz p=0.957054

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-135, - strand, RNAz p=0.898472
               

               
               35-191, + strand, RNAz p=0.957054

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-380, gnl|bosTau2|chr10 (40925408-40925027)
               

               
               3-380, gnl|canFam2|chr6 (39129372-39128779)
               

               
               3-380, gnl|dasNov1|scaffold_22049 (3987-3423)
               

               
               3-380, gnl|hg17|chr16 (5438110-5438699)
               

               
               3-380, gnl|Hg17|chr16 (5438313-5438722)
               

               
               3-380, gnl|mm7|chr16 (5108210-5108732)
               

               
               3-380, gnl|monDom2|scaffold_17 (41832531-41831879)
               

               
               3-380, gnl|panTro1|chr18 (5547183-5547772)
               

               
               3-380, gnl|rheMac2|chr20 (5629302-5629895)
               

               
               3-380, gnl|rn3|chr10 (10231640-10231140)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-380, gnl|bosTau2|chr10 (40925408-40925027)
               

               
               3-380, gnl|canFam2|chr6 (39129372-39128779)
               

               
               3-380, gnl|dasNov1|scaffold_22049 (3987-3423)
               

               
               3-380, gnl|hg17|chr16 (5438110-5438699)
               

               
               3-380, gnl|Hg17|chr16 (5438313-5438722)
               

               
               3-380, gnl|mm7|chr16 (5108210-5108732)
               

               
               3-380, gnl|monDom2|scaffold_17 (41832531-41831879)
               

               
               3-380, gnl|panTro1|chr18 (5547183-5547772)
               

               
               3-380, gnl|rheMac2|chr20 (5629302-5629895)
               

               
               3-380, gnl|rn3|chr10 (10231640-10231140)

	28-135, - strand, RNAz p=0.898472
	35-191, + strand, RNAz p=0.957054

	3-380, gnl\|bosTau2\|chr10 (40925408-40925027)
	3-380, gnl\|canFam2\|chr6 (39129372-39128779)
	3-380, gnl\|dasNov1\|scaffold_22049 (3987-3423)
	3-380, gnl\|hg17\|chr16 (5438110-5438699)
	3-380, gnl\|Hg17\|chr16 (5438313-5438722)
	3-380, gnl\|mm7\|chr16 (5108210-5108732)
	3-380, gnl\|monDom2\|scaffold_17 (41832531-41831879)
	3-380, gnl\|panTro1\|chr18 (5547183-5547772)
	3-380, gnl\|rheMac2\|chr20 (5629302-5629895)
	3-380, gnl\|rn3\|chr10 (10231640-10231140)