Non-Coding RNA Search

OvF6-UMC-p6mm3-010-f07

Sequence:


               
               CTTAATTTTCTCTTCCTCAATTTCTTGTTTAGAAATAAAAGACATTCCTGTTTCCTAGTA
GTGATATGAATAAATAAACATATCACATATACTTCCTAATGGAAGTATAATGTAAACAAT
AGAAATACTATTAGTAAAACAGATTTAATGCTTAGAGGTAAGAAAAGCAGACATATGTTA
GATACTTTTTCCAATTCAGTTGCAACGAAGAAATTGTTTTCTAGTTTAATTCATTTGGTT
ATTATTTTCCTTTGCATGTCTATGAGAATGCAGGGGGTGGGGGGGTCTCAAAAATTATTT
TCTCAATTGGTAATGTATGGAGTTAGAATATATATATGTATGTGATTTAACACTGCTTGT
GGATTTCCAACAAAACAAAAATAAAAGTAGTGTTAACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAATTTTCTCTTCCTCAATTTCTTGTTTAGAAATAAAAGACATTCCTGTTTCCTAGTA
GTGATATGAATAAATAAACATATCACATATACTTCCTAATGGAAGTATAATGTAAACAAT
AGAAATACTATTAGTAAAACAGATTTAATGCTTAGAGGTAAGAAAAGCAGACATATGTTA
GATACTTTTTCCAATTCAGTTGCAACGAAGAAATTGTTTTCTAGTTTAATTCATTTGGTT
ATTATTTTCCTTTGCATGTCTATGAGAATGCAGGGGGTGGGGGGGTCTCAAAAATTATTT
TCTCAATTGGTAATGTATGGAGTTAGAATATATATATGTATGTGATTTAACACTGCTTGT
GGATTTCCAACAAAACAAAAATAAAAGTAGTGTTAACTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               14-129, - strand, RNAz p=0.836705

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-129, - strand, RNAz p=0.836705

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-400, gnl|bosTau2|chr21 (31622618-31622217)
               

               
               1-400, gnl|canFam2|chr8 (18241927-18242213)
               

               
               1-400, gnl|dasNov1|scaffold_2281 (151443-151172)
               

               
               1-400, gnl|echTel1|scaffold_323880 (55330-55119)
               

               
               1-400, gnl|hg17|chr14 (36213764-36214057)
               

               
               1-400, gnl|Hg17|chr14 (36214187-36213773)
               

               
               1-400, gnl|loxAfr1|scaffold_150579 (4987-5235)
               

               
               1-400, gnl|mm7|chr12 (54638516-54638883)
               

               
               1-400, gnl|oryCun1|scaffold_205839 (34122-34407)
               

               
               1-400, gnl|panTro1|chr15_random (7583372-7583079)
               

               
               1-400, gnl|rheMac2|chr7 (99631987-99632282)
               

               
               1-400, gnl|rn3|chr6 (77123045-77123417)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-400, gnl|bosTau2|chr21 (31622618-31622217)
               

               
               1-400, gnl|canFam2|chr8 (18241927-18242213)
               

               
               1-400, gnl|dasNov1|scaffold_2281 (151443-151172)
               

               
               1-400, gnl|echTel1|scaffold_323880 (55330-55119)
               

               
               1-400, gnl|hg17|chr14 (36213764-36214057)
               

               
               1-400, gnl|Hg17|chr14 (36214187-36213773)
               

               
               1-400, gnl|loxAfr1|scaffold_150579 (4987-5235)
               

               
               1-400, gnl|mm7|chr12 (54638516-54638883)
               

               
               1-400, gnl|oryCun1|scaffold_205839 (34122-34407)
               

               
               1-400, gnl|panTro1|chr15_random (7583372-7583079)
               

               
               1-400, gnl|rheMac2|chr7 (99631987-99632282)
               

               
               1-400, gnl|rn3|chr6 (77123045-77123417)

	1-400, gnl\|bosTau2\|chr21 (31622618-31622217)
	1-400, gnl\|canFam2\|chr8 (18241927-18242213)
	1-400, gnl\|dasNov1\|scaffold_2281 (151443-151172)
	1-400, gnl\|echTel1\|scaffold_323880 (55330-55119)
	1-400, gnl\|hg17\|chr14 (36213764-36214057)
	1-400, gnl\|Hg17\|chr14 (36214187-36213773)
	1-400, gnl\|loxAfr1\|scaffold_150579 (4987-5235)
	1-400, gnl\|mm7\|chr12 (54638516-54638883)
	1-400, gnl\|oryCun1\|scaffold_205839 (34122-34407)
	1-400, gnl\|panTro1\|chr15_random (7583372-7583079)
	1-400, gnl\|rheMac2\|chr7 (99631987-99632282)
	1-400, gnl\|rn3\|chr6 (77123045-77123417)